miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 127516 0.66 0.702454
Target:  5'- aCGGCGGaCGGugcuguACaCGGGGUCC-UCg- -3'
miRNA:   3'- gGCCGCC-GUCu-----UG-GCCCCAGGcAGgu -5'
5544 3' -62 NC_001806.1 + 119750 0.66 0.702454
Target:  5'- gCCGGCGGCGacggccGGACUGGcuguGGagCCGUCg- -3'
miRNA:   3'- -GGCCGCCGU------CUUGGCC----CCa-GGCAGgu -5'
5544 3' -62 NC_001806.1 + 94541 0.66 0.683338
Target:  5'- -gGGCGGUGGggUCGGGccuuaUCGUCCc -3'
miRNA:   3'- ggCCGCCGUCuuGGCCCca---GGCAGGu -5'
5544 3' -62 NC_001806.1 + 42018 0.66 0.702454
Target:  5'- gCUGGCcGCGGggUUGGGGUCguggguCGUCaCGg -3'
miRNA:   3'- -GGCCGcCGUCuuGGCCCCAG------GCAG-GU- -5'
5544 3' -62 NC_001806.1 + 24537 0.66 0.692918
Target:  5'- gCCgGGCGGCGGccUCGGGGaccaCCGacgCCAu -3'
miRNA:   3'- -GG-CCGCCGUCuuGGCCCCa---GGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 37987 0.66 0.66407
Target:  5'- uCUGGgGGCAcgccGGCgGGGGUCCGacaaaCCAu -3'
miRNA:   3'- -GGCCgCCGUc---UUGgCCCCAGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 46467 0.67 0.596268
Target:  5'- aUGGCGGCGGuccagcuCUGGGacauGUCgCGUCCGc -3'
miRNA:   3'- gGCCGCCGUCuu-----GGCCC----CAG-GCAGGU- -5'
5544 3' -62 NC_001806.1 + 132981 0.67 0.614648
Target:  5'- gCUGGUGGUggccgcucccucAGAgcccuggGCCGGGG-CCGUCUu -3'
miRNA:   3'- -GGCCGCCG------------UCU-------UGGCCCCaGGCAGGu -5'
5544 3' -62 NC_001806.1 + 96502 0.67 0.596268
Target:  5'- cCCaGGCGGC-GAACgGGGGcccugccacUCCGgcgCCGc -3'
miRNA:   3'- -GG-CCGCCGuCUUGgCCCC---------AGGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 6076 0.67 0.604967
Target:  5'- cCCGGgGGCGGGcCCGggcggcggggggcGGGUCUcUCCGg -3'
miRNA:   3'- -GGCCgCCGUCUuGGC-------------CCCAGGcAGGU- -5'
5544 3' -62 NC_001806.1 + 81990 0.67 0.604967
Target:  5'- cUCGGCGGCgcggcacAGGAuCCGucucGUCCGUCCGg -3'
miRNA:   3'- -GGCCGCCG-------UCUU-GGCcc--CAGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 10686 0.67 0.644709
Target:  5'- cCCGGUcGCAGAugggGCCGGGGgggCGUacgCCAu -3'
miRNA:   3'- -GGCCGcCGUCU----UGGCCCCag-GCA---GGU- -5'
5544 3' -62 NC_001806.1 + 141428 0.67 0.615617
Target:  5'- gCGGCGcGCGGccAACCGGcGGauaacUCCGcCCAc -3'
miRNA:   3'- gGCCGC-CGUC--UUGGCC-CC-----AGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 38290 0.67 0.625312
Target:  5'- gCGaGCGGCGucGAguAUCGGcuccGGUCCGUCCu -3'
miRNA:   3'- gGC-CGCCGU--CU--UGGCC----CCAGGCAGGu -5'
5544 3' -62 NC_001806.1 + 4346 0.67 0.632102
Target:  5'- cCCGGCGGCGcucGAugcggcccgcggagGCCgcgGGGGUCCucgCCGc -3'
miRNA:   3'- -GGCCGCCGU---CU--------------UGG---CCCCAGGca-GGU- -5'
5544 3' -62 NC_001806.1 + 45284 0.67 0.635011
Target:  5'- gCGGCGGgAGAcgcgggcccGCgCGGGGagCCGcCCGg -3'
miRNA:   3'- gGCCGCCgUCU---------UG-GCCCCa-GGCaGGU- -5'
5544 3' -62 NC_001806.1 + 113381 0.67 0.635011
Target:  5'- uCCGGCGGCguuccGGGAcgcCCGGGGcCUGgagCUg -3'
miRNA:   3'- -GGCCGCCG-----UCUU---GGCCCCaGGCa--GGu -5'
5544 3' -62 NC_001806.1 + 86026 0.67 0.644709
Target:  5'- gCCGGggagGGCAGGGCCGcGGGgggggcgggCuCGUCCc -3'
miRNA:   3'- -GGCCg---CCGUCUUGGC-CCCa--------G-GCAGGu -5'
5544 3' -62 NC_001806.1 + 30289 0.67 0.644709
Target:  5'- cCCGG-GGCGGAGCCGG---CCGcCCGc -3'
miRNA:   3'- -GGCCgCCGUCUUGGCCccaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 55726 0.68 0.567436
Target:  5'- gCUGGCGGCuGAcCCGGGGgaccCCGa--- -3'
miRNA:   3'- -GGCCGCCGuCUuGGCCCCa---GGCaggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.