miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 148165 0.68 0.547462
Target:  5'- gCGGCGGCgccucugcgugggGGGGCgCGGGG--CGUCCGg -3'
miRNA:   3'- gGCCGCCG-------------UCUUG-GCCCCagGCAGGU- -5'
5544 3' -62 NC_001806.1 + 4830 0.68 0.548409
Target:  5'- -gGGCGGCGaGGCCgcGGGGUCgggcgucgggauCGUCCGg -3'
miRNA:   3'- ggCCGCCGUcUUGG--CCCCAG------------GCAGGU- -5'
5544 3' -62 NC_001806.1 + 93880 0.68 0.548409
Target:  5'- gCCGGuCGGCGGGcCCGcGGGaggCCGcCCc -3'
miRNA:   3'- -GGCC-GCCGUCUuGGC-CCCa--GGCaGGu -5'
5544 3' -62 NC_001806.1 + 151451 0.68 0.548409
Target:  5'- gCGGCGGCGGGgcgGCCGcGGG-CgCGcUCCu -3'
miRNA:   3'- gGCCGCCGUCU---UGGC-CCCaG-GC-AGGu -5'
5544 3' -62 NC_001806.1 + 65649 0.68 0.56648
Target:  5'- cCCGGCGGCcucccccuGGGuggcugcGCUGGGG-CCG-CCGg -3'
miRNA:   3'- -GGCCGCCG--------UCU-------UGGCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 99480 0.68 0.567436
Target:  5'- aUCGGCGGCGcGGGCCGu-GUCaaCGUCCAc -3'
miRNA:   3'- -GGCCGCCGU-CUUGGCccCAG--GCAGGU- -5'
5544 3' -62 NC_001806.1 + 55726 0.68 0.567436
Target:  5'- gCUGGCGGCuGAcCCGGGGgaccCCGa--- -3'
miRNA:   3'- -GGCCGCCGuCUuGGCCCCa---GGCaggu -5'
5544 3' -62 NC_001806.1 + 23055 0.68 0.567436
Target:  5'- gCCGGCGGCAGcgaggccGCCGuGG-CCG-CCGu -3'
miRNA:   3'- -GGCCGCCGUCu------UGGCcCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 44784 0.68 0.586626
Target:  5'- aUCGGCucGGUgAGGGCCGGGGgggUCG-CCAg -3'
miRNA:   3'- -GGCCG--CCG-UCUUGGCCCCa--GGCaGGU- -5'
5544 3' -62 NC_001806.1 + 62308 0.68 0.586626
Target:  5'- gUGGCGGCGG-GCCuggcgcggagGGGGUuuGUCg- -3'
miRNA:   3'- gGCCGCCGUCuUGG----------CCCCAggCAGgu -5'
5544 3' -62 NC_001806.1 + 151272 0.68 0.586626
Target:  5'- gCCgGGCGGUgGGGGCCGGGG-CCGg--- -3'
miRNA:   3'- -GG-CCGCCG-UCUUGGCCCCaGGCaggu -5'
5544 3' -62 NC_001806.1 + 46467 0.67 0.596268
Target:  5'- aUGGCGGCGGuccagcuCUGGGacauGUCgCGUCCGc -3'
miRNA:   3'- gGCCGCCGUCuu-----GGCCC----CAG-GCAGGU- -5'
5544 3' -62 NC_001806.1 + 96502 0.67 0.596268
Target:  5'- cCCaGGCGGC-GAACgGGGGcccugccacUCCGgcgCCGc -3'
miRNA:   3'- -GG-CCGCCGuCUUGgCCCC---------AGGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 81990 0.67 0.604967
Target:  5'- cUCGGCGGCgcggcacAGGAuCCGucucGUCCGUCCGg -3'
miRNA:   3'- -GGCCGCCG-------UCUU-GGCcc--CAGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 6076 0.67 0.604967
Target:  5'- cCCGGgGGCGGGcCCGggcggcggggggcGGGUCUcUCCGg -3'
miRNA:   3'- -GGCCgCCGUCUuGGC-------------CCCAGGcAGGU- -5'
5544 3' -62 NC_001806.1 + 132981 0.67 0.614648
Target:  5'- gCUGGUGGUggccgcucccucAGAgcccuggGCCGGGG-CCGUCUu -3'
miRNA:   3'- -GGCCGCCG------------UCU-------UGGCCCCaGGCAGGu -5'
5544 3' -62 NC_001806.1 + 141428 0.67 0.615617
Target:  5'- gCGGCGcGCGGccAACCGGcGGauaacUCCGcCCAc -3'
miRNA:   3'- gGCCGC-CGUC--UUGGCC-CC-----AGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 38290 0.67 0.625312
Target:  5'- gCGaGCGGCGucGAguAUCGGcuccGGUCCGUCCu -3'
miRNA:   3'- gGC-CGCCGU--CU--UGGCC----CCAGGCAGGu -5'
5544 3' -62 NC_001806.1 + 4346 0.67 0.632102
Target:  5'- cCCGGCGGCGcucGAugcggcccgcggagGCCgcgGGGGUCCucgCCGc -3'
miRNA:   3'- -GGCCGCCGU---CU--------------UGG---CCCCAGGca-GGU- -5'
5544 3' -62 NC_001806.1 + 113381 0.67 0.635011
Target:  5'- uCCGGCGGCguuccGGGAcgcCCGGGGcCUGgagCUg -3'
miRNA:   3'- -GGCCGCCG-----UCUU---GGCCCCaGGCa--GGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.