miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 151272 0.68 0.586626
Target:  5'- gCCgGGCGGUgGGGGCCGGGG-CCGg--- -3'
miRNA:   3'- -GG-CCGCCG-UCUUGGCCCCaGGCaggu -5'
5544 3' -62 NC_001806.1 + 62308 0.68 0.586626
Target:  5'- gUGGCGGCGG-GCCuggcgcggagGGGGUuuGUCg- -3'
miRNA:   3'- gGCCGCCGUCuUGG----------CCCCAggCAGgu -5'
5544 3' -62 NC_001806.1 + 55726 0.68 0.567436
Target:  5'- gCUGGCGGCuGAcCCGGGGgaccCCGa--- -3'
miRNA:   3'- -GGCCGCCGuCUuGGCCCCa---GGCaggu -5'
5544 3' -62 NC_001806.1 + 99480 0.68 0.567436
Target:  5'- aUCGGCGGCGcGGGCCGu-GUCaaCGUCCAc -3'
miRNA:   3'- -GGCCGCCGU-CUUGGCccCAG--GCAGGU- -5'
5544 3' -62 NC_001806.1 + 23055 0.68 0.567436
Target:  5'- gCCGGCGGCAGcgaggccGCCGuGG-CCG-CCGu -3'
miRNA:   3'- -GGCCGCCGUCu------UGGCcCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 65649 0.68 0.56648
Target:  5'- cCCGGCGGCcucccccuGGGuggcugcGCUGGGG-CCG-CCGg -3'
miRNA:   3'- -GGCCGCCG--------UCU-------UGGCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 151451 0.68 0.548409
Target:  5'- gCGGCGGCGGGgcgGCCGcGGG-CgCGcUCCu -3'
miRNA:   3'- gGCCGCCGUCU---UGGC-CCCaG-GC-AGGu -5'
5544 3' -62 NC_001806.1 + 93880 0.68 0.548409
Target:  5'- gCCGGuCGGCGGGcCCGcGGGaggCCGcCCc -3'
miRNA:   3'- -GGCC-GCCGUCUuGGC-CCCa--GGCaGGu -5'
5544 3' -62 NC_001806.1 + 4830 0.68 0.548409
Target:  5'- -gGGCGGCGaGGCCgcGGGGUCgggcgucgggauCGUCCGg -3'
miRNA:   3'- ggCCGCCGUcUUGG--CCCCAG------------GCAGGU- -5'
5544 3' -62 NC_001806.1 + 148165 0.68 0.547462
Target:  5'- gCGGCGGCgccucugcgugggGGGGCgCGGGG--CGUCCGg -3'
miRNA:   3'- gGCCGCCG-------------UCUUG-GCCCCagGCAGGU- -5'
5544 3' -62 NC_001806.1 + 39410 0.68 0.53897
Target:  5'- -gGGCGGUGGuacaagaagguGACC-GGGUCCGUCuCAa -3'
miRNA:   3'- ggCCGCCGUC-----------UUGGcCCCAGGCAG-GU- -5'
5544 3' -62 NC_001806.1 + 37763 0.68 0.53897
Target:  5'- gUCGGCGGCGGGcgccuuucgcuCCGGGG-CCGgggcgcgggggUCCGc -3'
miRNA:   3'- -GGCCGCCGUCUu----------GGCCCCaGGC-----------AGGU- -5'
5544 3' -62 NC_001806.1 + 77962 0.68 0.53897
Target:  5'- gCGGCGGCc---CCGGGG-CCG-CCGc -3'
miRNA:   3'- gGCCGCCGucuuGGCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 2866 0.69 0.520263
Target:  5'- -gGGgGGCGcgggcguccGAGCCGGGGg-CGUCCGc -3'
miRNA:   3'- ggCCgCCGU---------CUUGGCCCCagGCAGGU- -5'
5544 3' -62 NC_001806.1 + 34404 0.69 0.520263
Target:  5'- gCGGUGGCcGGGCCGGGccgggCCGggCCGg -3'
miRNA:   3'- gGCCGCCGuCUUGGCCCca---GGCa-GGU- -5'
5544 3' -62 NC_001806.1 + 64953 0.69 0.511006
Target:  5'- aCCGGCgucGGCGcccGGGCCGGGGgucCCGgggcaaacaUCCAg -3'
miRNA:   3'- -GGCCG---CCGU---CUUGGCCCCa--GGC---------AGGU- -5'
5544 3' -62 NC_001806.1 + 33104 0.69 0.501817
Target:  5'- gCCGGCGaGCGGGuccggaCGGGGcCCGgaccgCCGc -3'
miRNA:   3'- -GGCCGC-CGUCUug----GCCCCaGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 89088 0.69 0.483663
Target:  5'- cCCGGCGcGCuucuCCGGGGgggcauccUCGUCCAg -3'
miRNA:   3'- -GGCCGC-CGucuuGGCCCCa-------GGCAGGU- -5'
5544 3' -62 NC_001806.1 + 140543 0.69 0.483663
Target:  5'- aCGGCggGGCAGAGCCGc---CCGUCCGa -3'
miRNA:   3'- gGCCG--CCGUCUUGGCcccaGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 2459 0.7 0.465831
Target:  5'- cCCGGCGGCcccgugGGggUgGGGGUuaUCGUCg- -3'
miRNA:   3'- -GGCCGCCG------UCuuGgCCCCA--GGCAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.