Results 61 - 80 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5544 | 3' | -62 | NC_001806.1 | + | 21323 | 0.7 | 0.465831 |
Target: 5'- gCCGGCGa-GGAcGCCGGGGacgCCGUCUc -3' miRNA: 3'- -GGCCGCcgUCU-UGGCCCCa--GGCAGGu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 33811 | 0.7 | 0.457044 |
Target: 5'- gCCGGCGGguGGACucgCGGGGggCCGg--- -3' miRNA: 3'- -GGCCGCCguCUUG---GCCCCa-GGCaggu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 33615 | 0.7 | 0.457044 |
Target: 5'- aCCGGC-GCGGGGCgGGGGgCCGgauacCCAc -3' miRNA: 3'- -GGCCGcCGUCUUGgCCCCaGGCa----GGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 150486 | 0.7 | 0.45617 |
Target: 5'- gCCGGaaGCGGGaagggcgGCCGGGG-CCGcCCAu -3' miRNA: 3'- -GGCCgcCGUCU-------UGGCCCCaGGCaGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 38395 | 0.7 | 0.448346 |
Target: 5'- gCGGCGGCucuccGCCggcucgggGGGGUCCucGUCCAg -3' miRNA: 3'- gGCCGCCGucu--UGG--------CCCCAGG--CAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 151300 | 0.7 | 0.448346 |
Target: 5'- gCGGCGGCGGuggGCCGGGccUCUGgcgCCGg -3' miRNA: 3'- gGCCGCCGUCu--UGGCCCc-AGGCa--GGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 100388 | 0.7 | 0.43974 |
Target: 5'- gCCgGGCGGCgcgGGGGCCGGGGUgCCcgauGUCgGa -3' miRNA: 3'- -GG-CCGCCG---UCUUGGCCCCA-GG----CAGgU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 64568 | 0.7 | 0.43123 |
Target: 5'- gCGuuCGGCGGGACCGGaGGaaCGUCCAg -3' miRNA: 3'- gGCc-GCCGUCUUGGCC-CCagGCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 4730 | 0.71 | 0.40629 |
Target: 5'- cCCGuucGCGGCcccGGGCCGGGGcCCGgucgCCGg -3' miRNA: 3'- -GGC---CGCCGu--CUUGGCCCCaGGCa---GGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 17789 | 0.71 | 0.40629 |
Target: 5'- -gGGUGGgAGAACCGuGGG-CCGUgCCGa -3' miRNA: 3'- ggCCGCCgUCUUGGC-CCCaGGCA-GGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 4658 | 0.71 | 0.403033 |
Target: 5'- gCGGCGGCuGGGCCGGcGGgcgcggcgacaggCgGUCCGu -3' miRNA: 3'- gGCCGCCGuCUUGGCC-CCa------------GgCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 99573 | 0.71 | 0.390175 |
Target: 5'- uCCGGUGGCggcgggggGGAACgCGGGcUCCGUCg- -3' miRNA: 3'- -GGCCGCCG--------UCUUG-GCCCcAGGCAGgu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 144828 | 0.71 | 0.390175 |
Target: 5'- cCCGaccGCGGCGGu-CCGGGccCCGUCCGg -3' miRNA: 3'- -GGC---CGCCGUCuuGGCCCcaGGCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 146842 | 0.71 | 0.382276 |
Target: 5'- gCGGCGGCuccAGCCGGGGaCCGcggCCc -3' miRNA: 3'- gGCCGCCGuc-UUGGCCCCaGGCa--GGu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 19888 | 0.71 | 0.382276 |
Target: 5'- aCCGGUGGguuucugucguCGGAGgcccCCGGGGUgCGUCCc -3' miRNA: 3'- -GGCCGCC-----------GUCUU----GGCCCCAgGCAGGu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 96387 | 0.71 | 0.374484 |
Target: 5'- cCCGcGCGGgGGcGCCGGuGGUUCGUCg- -3' miRNA: 3'- -GGC-CGCCgUCuUGGCC-CCAGGCAGgu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 22869 | 0.72 | 0.358474 |
Target: 5'- cCUGGCGGCcgucccgGGGcugGCCGGGGcCCGgcccgCCAg -3' miRNA: 3'- -GGCCGCCG-------UCU---UGGCCCCaGGCa----GGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 5935 | 0.72 | 0.358474 |
Target: 5'- gCCGGCgGGCGGGACCgccccaagggggcGGGG-CCG-CCGg -3' miRNA: 3'- -GGCCG-CCGUCUUGG-------------CCCCaGGCaGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 37922 | 0.72 | 0.351761 |
Target: 5'- aUGGgGGC---GCCGGGGccgUCCGUCCAc -3' miRNA: 3'- gGCCgCCGucuUGGCCCC---AGGCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 68587 | 0.72 | 0.344407 |
Target: 5'- gCGGCGGCccuGGGGCCGGuccgcGUCCG-CCAg -3' miRNA: 3'- gGCCGCCG---UCUUGGCCc----CAGGCaGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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