miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 3309 0.75 0.225734
Target:  5'- gCGGCGGCGGGGaagcggggcCCGcGGGUCCcUCCGg -3'
miRNA:   3'- gGCCGCCGUCUU---------GGC-CCCAGGcAGGU- -5'
5544 3' -62 NC_001806.1 + 147211 0.77 0.173806
Target:  5'- cCCGGCGGCGGAagaggcggcccccGCgGGGGUCgGggCCGa -3'
miRNA:   3'- -GGCCGCCGUCU-------------UGgCCCCAGgCa-GGU- -5'
5544 3' -62 NC_001806.1 + 1447 0.8 0.117983
Target:  5'- gCCGGCGGCAGGGCCcccGGG-CCGUCg- -3'
miRNA:   3'- -GGCCGCCGUCUUGGc--CCCaGGCAGgu -5'
5544 3' -62 NC_001806.1 + 20393 0.81 0.08966
Target:  5'- uCCGGCgGGCGGGACCGGGGggcCCGgggacggCCAa -3'
miRNA:   3'- -GGCCG-CCGUCUUGGCCCCa--GGCa------GGU- -5'
5544 3' -62 NC_001806.1 + 23937 0.84 0.061293
Target:  5'- gCCGGCGGCGGGGCCuGGGGgggCCG-CCGg -3'
miRNA:   3'- -GGCCGCCGUCUUGG-CCCCa--GGCaGGU- -5'
5544 3' -62 NC_001806.1 + 96387 0.71 0.374484
Target:  5'- cCCGcGCGGgGGcGCCGGuGGUUCGUCg- -3'
miRNA:   3'- -GGC-CGCCgUCuUGGCC-CCAGGCAGgu -5'
5544 3' -62 NC_001806.1 + 19888 0.71 0.382276
Target:  5'- aCCGGUGGguuucugucguCGGAGgcccCCGGGGUgCGUCCc -3'
miRNA:   3'- -GGCCGCC-----------GUCUU----GGCCCCAgGCAGGu -5'
5544 3' -62 NC_001806.1 + 33811 0.7 0.457044
Target:  5'- gCCGGCGGguGGACucgCGGGGggCCGg--- -3'
miRNA:   3'- -GGCCGCCguCUUG---GCCCCa-GGCaggu -5'
5544 3' -62 NC_001806.1 + 33615 0.7 0.457044
Target:  5'- aCCGGC-GCGGGGCgGGGGgCCGgauacCCAc -3'
miRNA:   3'- -GGCCGcCGUCUUGgCCCCaGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 150486 0.7 0.45617
Target:  5'- gCCGGaaGCGGGaagggcgGCCGGGG-CCGcCCAu -3'
miRNA:   3'- -GGCCgcCGUCU-------UGGCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 151300 0.7 0.448346
Target:  5'- gCGGCGGCGGuggGCCGGGccUCUGgcgCCGg -3'
miRNA:   3'- gGCCGCCGUCu--UGGCCCc-AGGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 38395 0.7 0.448346
Target:  5'- gCGGCGGCucuccGCCggcucgggGGGGUCCucGUCCAg -3'
miRNA:   3'- gGCCGCCGucu--UGG--------CCCCAGG--CAGGU- -5'
5544 3' -62 NC_001806.1 + 100388 0.7 0.43974
Target:  5'- gCCgGGCGGCgcgGGGGCCGGGGUgCCcgauGUCgGa -3'
miRNA:   3'- -GG-CCGCCG---UCUUGGCCCCA-GG----CAGgU- -5'
5544 3' -62 NC_001806.1 + 64568 0.7 0.43123
Target:  5'- gCGuuCGGCGGGACCGGaGGaaCGUCCAg -3'
miRNA:   3'- gGCc-GCCGUCUUGGCC-CCagGCAGGU- -5'
5544 3' -62 NC_001806.1 + 4730 0.71 0.40629
Target:  5'- cCCGuucGCGGCcccGGGCCGGGGcCCGgucgCCGg -3'
miRNA:   3'- -GGC---CGCCGu--CUUGGCCCCaGGCa---GGU- -5'
5544 3' -62 NC_001806.1 + 17789 0.71 0.40629
Target:  5'- -gGGUGGgAGAACCGuGGG-CCGUgCCGa -3'
miRNA:   3'- ggCCGCCgUCUUGGC-CCCaGGCA-GGU- -5'
5544 3' -62 NC_001806.1 + 4658 0.71 0.403033
Target:  5'- gCGGCGGCuGGGCCGGcGGgcgcggcgacaggCgGUCCGu -3'
miRNA:   3'- gGCCGCCGuCUUGGCC-CCa------------GgCAGGU- -5'
5544 3' -62 NC_001806.1 + 144828 0.71 0.390175
Target:  5'- cCCGaccGCGGCGGu-CCGGGccCCGUCCGg -3'
miRNA:   3'- -GGC---CGCCGUCuuGGCCCcaGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 99573 0.71 0.390175
Target:  5'- uCCGGUGGCggcgggggGGAACgCGGGcUCCGUCg- -3'
miRNA:   3'- -GGCCGCCG--------UCUUG-GCCCcAGGCAGgu -5'
5544 3' -62 NC_001806.1 + 146842 0.71 0.382276
Target:  5'- gCGGCGGCuccAGCCGGGGaCCGcggCCc -3'
miRNA:   3'- gGCCGCCGuc-UUGGCCCCaGGCa--GGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.