miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 99480 0.68 0.567436
Target:  5'- aUCGGCGGCGcGGGCCGu-GUCaaCGUCCAc -3'
miRNA:   3'- -GGCCGCCGU-CUUGGCccCAG--GCAGGU- -5'
5544 3' -62 NC_001806.1 + 96502 0.67 0.596268
Target:  5'- cCCaGGCGGC-GAACgGGGGcccugccacUCCGgcgCCGc -3'
miRNA:   3'- -GG-CCGCCGuCUUGgCCCC---------AGGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 96455 0.66 0.691962
Target:  5'- gUCGGCGGCuccGAguucccccggcacGCCuGGGGUCgCGgCCGc -3'
miRNA:   3'- -GGCCGCCGu--CU-------------UGG-CCCCAG-GCaGGU- -5'
5544 3' -62 NC_001806.1 + 96387 0.71 0.374484
Target:  5'- cCCGcGCGGgGGcGCCGGuGGUUCGUCg- -3'
miRNA:   3'- -GGC-CGCCgUCuUGGCC-CCAGGCAGgu -5'
5544 3' -62 NC_001806.1 + 94541 0.66 0.683338
Target:  5'- -gGGCGGUGGggUCGGGccuuaUCGUCCc -3'
miRNA:   3'- ggCCGCCGUCuuGGCCCca---GGCAGGu -5'
5544 3' -62 NC_001806.1 + 93880 0.68 0.548409
Target:  5'- gCCGGuCGGCGGGcCCGcGGGaggCCGcCCc -3'
miRNA:   3'- -GGCC-GCCGUCUuGGC-CCCa--GGCaGGu -5'
5544 3' -62 NC_001806.1 + 89088 0.69 0.483663
Target:  5'- cCCGGCGcGCuucuCCGGGGgggcauccUCGUCCAg -3'
miRNA:   3'- -GGCCGC-CGucuuGGCCCCa-------GGCAGGU- -5'
5544 3' -62 NC_001806.1 + 86026 0.67 0.644709
Target:  5'- gCCGGggagGGCAGGGCCGcGGGgggggcgggCuCGUCCc -3'
miRNA:   3'- -GGCCg---CCGUCUUGGC-CCCa--------G-GCAGGu -5'
5544 3' -62 NC_001806.1 + 81990 0.67 0.604967
Target:  5'- cUCGGCGGCgcggcacAGGAuCCGucucGUCCGUCCGg -3'
miRNA:   3'- -GGCCGCCG-------UCUU-GGCcc--CAGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 78921 0.66 0.702454
Target:  5'- gCCGaGCGGCcccucgcCCGGGGcCCG-CCGu -3'
miRNA:   3'- -GGC-CGCCGucuu---GGCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 78672 0.66 0.683338
Target:  5'- gCUGGCGGCAGugcuCCuGGGcgcgcCCGUCg- -3'
miRNA:   3'- -GGCCGCCGUCuu--GGcCCCa----GGCAGgu -5'
5544 3' -62 NC_001806.1 + 77962 0.68 0.53897
Target:  5'- gCGGCGGCc---CCGGGG-CCG-CCGc -3'
miRNA:   3'- gGCCGCCGucuuGGCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 71650 0.74 0.264862
Target:  5'- -gGGUGGCGGAAacaacacuaaccCCgGGGGUCCgGUCCAu -3'
miRNA:   3'- ggCCGCCGUCUU------------GG-CCCCAGG-CAGGU- -5'
5544 3' -62 NC_001806.1 + 68587 0.72 0.344407
Target:  5'- gCGGCGGCccuGGGGCCGGuccgcGUCCG-CCAg -3'
miRNA:   3'- gGCCGCCG---UCUUGGCCc----CAGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 68100 0.66 0.673719
Target:  5'- gCCGGgcgucaUGGCAG-ACCGcGGUcucCCGUCCGa -3'
miRNA:   3'- -GGCC------GCCGUCuUGGCcCCA---GGCAGGU- -5'
5544 3' -62 NC_001806.1 + 65649 0.68 0.56648
Target:  5'- cCCGGCGGCcucccccuGGGuggcugcGCUGGGG-CCG-CCGg -3'
miRNA:   3'- -GGCCGCCG--------UCU-------UGGCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 64953 0.69 0.511006
Target:  5'- aCCGGCgucGGCGcccGGGCCGGGGgucCCGgggcaaacaUCCAg -3'
miRNA:   3'- -GGCCG---CCGU---CUUGGCCCCa--GGC---------AGGU- -5'
5544 3' -62 NC_001806.1 + 64568 0.7 0.43123
Target:  5'- gCGuuCGGCGGGACCGGaGGaaCGUCCAg -3'
miRNA:   3'- gGCc-GCCGUCUUGGCC-CCagGCAGGU- -5'
5544 3' -62 NC_001806.1 + 62308 0.68 0.586626
Target:  5'- gUGGCGGCGG-GCCuggcgcggagGGGGUuuGUCg- -3'
miRNA:   3'- gGCCGCCGUCuUGG----------CCCCAggCAGgu -5'
5544 3' -62 NC_001806.1 + 59132 0.66 0.702454
Target:  5'- uUCGGUGGUGagggcagccGGGCCGGGGUCUcggGUgCGg -3'
miRNA:   3'- -GGCCGCCGU---------CUUGGCCCCAGG---CAgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.