miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 151451 0.68 0.548409
Target:  5'- gCGGCGGCGGGgcgGCCGcGGG-CgCGcUCCu -3'
miRNA:   3'- gGCCGCCGUCU---UGGC-CCCaG-GC-AGGu -5'
5544 3' -62 NC_001806.1 + 151300 0.7 0.448346
Target:  5'- gCGGCGGCGGuggGCCGGGccUCUGgcgCCGg -3'
miRNA:   3'- gGCCGCCGUCu--UGGCCCc-AGGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 151272 0.68 0.586626
Target:  5'- gCCgGGCGGUgGGGGCCGGGG-CCGg--- -3'
miRNA:   3'- -GG-CCGCCG-UCUUGGCCCCaGGCaggu -5'
5544 3' -62 NC_001806.1 + 150947 0.66 0.673719
Target:  5'- cCCGGCGcCGGAACCGagcccGGUCgGcCCGc -3'
miRNA:   3'- -GGCCGCcGUCUUGGCc----CCAGgCaGGU- -5'
5544 3' -62 NC_001806.1 + 150486 0.7 0.45617
Target:  5'- gCCGGaaGCGGGaagggcgGCCGGGG-CCGcCCAu -3'
miRNA:   3'- -GGCCgcCGUCU-------UGGCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 148165 0.68 0.547462
Target:  5'- gCGGCGGCgccucugcgugggGGGGCgCGGGG--CGUCCGg -3'
miRNA:   3'- gGCCGCCG-------------UCUUG-GCCCCagGCAGGU- -5'
5544 3' -62 NC_001806.1 + 147890 0.66 0.672755
Target:  5'- -gGGgGGCGGGucuguugACaagGGGGcCCGUCCGg -3'
miRNA:   3'- ggCCgCCGUCU-------UGg--CCCCaGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 147211 0.77 0.173806
Target:  5'- cCCGGCGGCGGAagaggcggcccccGCgGGGGUCgGggCCGa -3'
miRNA:   3'- -GGCCGCCGUCU-------------UGgCCCCAGgCa-GGU- -5'
5544 3' -62 NC_001806.1 + 146842 0.71 0.382276
Target:  5'- gCGGCGGCuccAGCCGGGGaCCGcggCCc -3'
miRNA:   3'- gGCCGCCGuc-UUGGCCCCaGGCa--GGu -5'
5544 3' -62 NC_001806.1 + 144828 0.71 0.390175
Target:  5'- cCCGaccGCGGCGGu-CCGGGccCCGUCCGg -3'
miRNA:   3'- -GGC---CGCCGUCuuGGCCCcaGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 142239 1.09 0.000981
Target:  5'- uCCGGCGGCAGAACCGGGGUCCGUCCAg -3'
miRNA:   3'- -GGCCGCCGUCUUGGCCCCAGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 141428 0.67 0.615617
Target:  5'- gCGGCGcGCGGccAACCGGcGGauaacUCCGcCCAc -3'
miRNA:   3'- gGCCGC-CGUC--UUGGCC-CC-----AGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 140543 0.69 0.483663
Target:  5'- aCGGCggGGCAGAGCCGc---CCGUCCGa -3'
miRNA:   3'- gGCCG--CCGUCUUGGCcccaGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 136994 0.66 0.702454
Target:  5'- aUGGCGGCGGccGgCGGGGagCG-CCAg -3'
miRNA:   3'- gGCCGCCGUCu-UgGCCCCagGCaGGU- -5'
5544 3' -62 NC_001806.1 + 132981 0.67 0.614648
Target:  5'- gCUGGUGGUggccgcucccucAGAgcccuggGCCGGGG-CCGUCUu -3'
miRNA:   3'- -GGCCGCCG------------UCU-------UGGCCCCaGGCAGGu -5'
5544 3' -62 NC_001806.1 + 127516 0.66 0.702454
Target:  5'- aCGGCGGaCGGugcuguACaCGGGGUCC-UCg- -3'
miRNA:   3'- gGCCGCC-GUCu-----UG-GCCCCAGGcAGgu -5'
5544 3' -62 NC_001806.1 + 119750 0.66 0.702454
Target:  5'- gCCGGCGGCGacggccGGACUGGcuguGGagCCGUCg- -3'
miRNA:   3'- -GGCCGCCGU------CUUGGCC----CCa-GGCAGgu -5'
5544 3' -62 NC_001806.1 + 113381 0.67 0.635011
Target:  5'- uCCGGCGGCguuccGGGAcgcCCGGGGcCUGgagCUg -3'
miRNA:   3'- -GGCCGCCG-----UCUU---GGCCCCaGGCa--GGu -5'
5544 3' -62 NC_001806.1 + 100388 0.7 0.43974
Target:  5'- gCCgGGCGGCgcgGGGGCCGGGGUgCCcgauGUCgGa -3'
miRNA:   3'- -GG-CCGCCG---UCUUGGCCCCA-GG----CAGgU- -5'
5544 3' -62 NC_001806.1 + 99573 0.71 0.390175
Target:  5'- uCCGGUGGCggcgggggGGAACgCGGGcUCCGUCg- -3'
miRNA:   3'- -GGCCGCCG--------UCUUG-GCCCcAGGCAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.