Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5544 | 3' | -62 | NC_001806.1 | + | 142239 | 1.09 | 0.000981 |
Target: 5'- uCCGGCGGCAGAACCGGGGUCCGUCCAg -3' miRNA: 3'- -GGCCGCCGUCUUGGCCCCAGGCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 23937 | 0.84 | 0.061293 |
Target: 5'- gCCGGCGGCGGGGCCuGGGGgggCCG-CCGg -3' miRNA: 3'- -GGCCGCCGUCUUGG-CCCCa--GGCaGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 20393 | 0.81 | 0.08966 |
Target: 5'- uCCGGCgGGCGGGACCGGGGggcCCGgggacggCCAa -3' miRNA: 3'- -GGCCG-CCGUCUUGGCCCCa--GGCa------GGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 1447 | 0.8 | 0.117983 |
Target: 5'- gCCGGCGGCAGGGCCcccGGG-CCGUCg- -3' miRNA: 3'- -GGCCGCCGUCUUGGc--CCCaGGCAGgu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 147211 | 0.77 | 0.173806 |
Target: 5'- cCCGGCGGCGGAagaggcggcccccGCgGGGGUCgGggCCGa -3' miRNA: 3'- -GGCCGCCGUCU-------------UGgCCCCAGgCa-GGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 3309 | 0.75 | 0.225734 |
Target: 5'- gCGGCGGCGGGGaagcggggcCCGcGGGUCCcUCCGg -3' miRNA: 3'- gGCCGCCGUCUU---------GGC-CCCAGGcAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 71650 | 0.74 | 0.264862 |
Target: 5'- -gGGUGGCGGAAacaacacuaaccCCgGGGGUCCgGUCCAu -3' miRNA: 3'- ggCCGCCGUCUU------------GG-CCCCAGG-CAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 20616 | 0.73 | 0.296057 |
Target: 5'- gCGGaugGGCGGGGCCgGGGGUUCGaCCAa -3' miRNA: 3'- gGCCg--CCGUCUUGG-CCCCAGGCaGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 22869 | 0.72 | 0.358474 |
Target: 5'- cCUGGCGGCcgucccgGGGcugGCCGGGGcCCGgcccgCCAg -3' miRNA: 3'- -GGCCGCCG-------UCU---UGGCCCCaGGCa----GGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 5935 | 0.72 | 0.358474 |
Target: 5'- gCCGGCgGGCGGGACCgccccaagggggcGGGG-CCG-CCGg -3' miRNA: 3'- -GGCCG-CCGUCUUGG-------------CCCCaGGCaGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 37922 | 0.72 | 0.351761 |
Target: 5'- aUGGgGGC---GCCGGGGccgUCCGUCCAc -3' miRNA: 3'- gGCCgCCGucuUGGCCCC---AGGCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 68587 | 0.72 | 0.344407 |
Target: 5'- gCGGCGGCccuGGGGCCGGuccgcGUCCG-CCAg -3' miRNA: 3'- gGCCGCCG---UCUUGGCCc----CAGGCaGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 20991 | 0.72 | 0.344407 |
Target: 5'- aCGGCGGgGGucgUCGGGGUCCGUg-- -3' miRNA: 3'- gGCCGCCgUCuu-GGCCCCAGGCAggu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 23552 | 0.72 | 0.330033 |
Target: 5'- gCGGCGGCAGcccCCGGGGcCCaG-CCAc -3' miRNA: 3'- gGCCGCCGUCuu-GGCCCCaGG-CaGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 4658 | 0.71 | 0.403033 |
Target: 5'- gCGGCGGCuGGGCCGGcGGgcgcggcgacaggCgGUCCGu -3' miRNA: 3'- gGCCGCCGuCUUGGCC-CCa------------GgCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 144828 | 0.71 | 0.390175 |
Target: 5'- cCCGaccGCGGCGGu-CCGGGccCCGUCCGg -3' miRNA: 3'- -GGC---CGCCGUCuuGGCCCcaGGCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 99573 | 0.71 | 0.390175 |
Target: 5'- uCCGGUGGCggcgggggGGAACgCGGGcUCCGUCg- -3' miRNA: 3'- -GGCCGCCG--------UCUUG-GCCCcAGGCAGgu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 146842 | 0.71 | 0.382276 |
Target: 5'- gCGGCGGCuccAGCCGGGGaCCGcggCCc -3' miRNA: 3'- gGCCGCCGuc-UUGGCCCCaGGCa--GGu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 19888 | 0.71 | 0.382276 |
Target: 5'- aCCGGUGGguuucugucguCGGAGgcccCCGGGGUgCGUCCc -3' miRNA: 3'- -GGCCGCC-----------GUCUU----GGCCCCAgGCAGGu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 17789 | 0.71 | 0.40629 |
Target: 5'- -gGGUGGgAGAACCGuGGG-CCGUgCCGa -3' miRNA: 3'- ggCCGCCgUCUUGGC-CCCaGGCA-GGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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