miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5546 5' -60 NC_001806.1 + 5442 0.66 0.782189
Target:  5'- cGCUCCGUGUg-GACGaUCGGGG-CGUc -3'
miRNA:   3'- -CGGGGCGCGaaCUGCcAGUCCCaGCA- -5'
5546 5' -60 NC_001806.1 + 149793 0.66 0.764081
Target:  5'- aCCUCGCGCUgggGGCGGcccUCAGGccggCGg -3'
miRNA:   3'- cGGGGCGCGAa--CUGCC---AGUCCca--GCa -5'
5546 5' -60 NC_001806.1 + 740 0.66 0.754859
Target:  5'- cGUCCCGCGCUcccuCGGg-GGGGuUCGg -3'
miRNA:   3'- -CGGGGCGCGAacu-GCCagUCCC-AGCa -5'
5546 5' -60 NC_001806.1 + 88809 0.66 0.754859
Target:  5'- gGCCCaggaGCGUgUGACGGUCcccGUCGg -3'
miRNA:   3'- -CGGGg---CGCGaACUGCCAGuccCAGCa -5'
5546 5' -60 NC_001806.1 + 24067 0.66 0.745536
Target:  5'- cGCCCCcgacgugucgGCGCUgGGCGcaCAGGG-CGUg -3'
miRNA:   3'- -CGGGG----------CGCGAaCUGCcaGUCCCaGCA- -5'
5546 5' -60 NC_001806.1 + 41815 0.67 0.726618
Target:  5'- gGCCCCGCaauacGCgggGGCGGgcgUCAGGGcccCGg -3'
miRNA:   3'- -CGGGGCG-----CGaa-CUGCC---AGUCCCa--GCa -5'
5546 5' -60 NC_001806.1 + 144348 0.67 0.717041
Target:  5'- cGCCCCGCGC----CGGUCcauuaAGGGcgcgCGUg -3'
miRNA:   3'- -CGGGGCGCGaacuGCCAG-----UCCCa---GCA- -5'
5546 5' -60 NC_001806.1 + 84233 0.67 0.707396
Target:  5'- gGCCaCCGUGCUgaaacACGGcCGGGGgcgCGg -3'
miRNA:   3'- -CGG-GGCGCGAac---UGCCaGUCCCa--GCa -5'
5546 5' -60 NC_001806.1 + 41424 0.67 0.707396
Target:  5'- uGCCCaGCGCgccgUGGUCGGGGUgCGc -3'
miRNA:   3'- -CGGGgCGCGaacuGCCAGUCCCA-GCa -5'
5546 5' -60 NC_001806.1 + 139805 0.67 0.687935
Target:  5'- gGCaCCCGCGCgaucAUGGUaCGGGGcCGg -3'
miRNA:   3'- -CG-GGGCGCGaac-UGCCA-GUCCCaGCa -5'
5546 5' -60 NC_001806.1 + 20594 0.67 0.687935
Target:  5'- cGCCCCGCccauggcagaugGCgcgGAUGGgCGGGGcCGg -3'
miRNA:   3'- -CGGGGCG------------CGaa-CUGCCaGUCCCaGCa -5'
5546 5' -60 NC_001806.1 + 147229 0.67 0.678136
Target:  5'- gGCCCC-CGC--GGgGGUCGGGGcCGa -3'
miRNA:   3'- -CGGGGcGCGaaCUgCCAGUCCCaGCa -5'
5546 5' -60 NC_001806.1 + 133414 0.67 0.678136
Target:  5'- gGgCCCGCGUacaccacGGCGGcaGGGGUCGUa -3'
miRNA:   3'- -CgGGGCGCGaa-----CUGCCagUCCCAGCA- -5'
5546 5' -60 NC_001806.1 + 9745 0.68 0.658439
Target:  5'- cGCCCCuaaccgcaggGCGCc-GugGGUUGGGGgcgCGUg -3'
miRNA:   3'- -CGGGG----------CGCGaaCugCCAGUCCCa--GCA- -5'
5546 5' -60 NC_001806.1 + 57405 0.68 0.648557
Target:  5'- aUCCCGCGCcuuggccgUGAUGGcacgCGGGGUgGUu -3'
miRNA:   3'- cGGGGCGCGa-------ACUGCCa---GUCCCAgCA- -5'
5546 5' -60 NC_001806.1 + 41215 0.68 0.618867
Target:  5'- aGCCCCGCGCcuaaaGugGccCAGGGccUCGUg -3'
miRNA:   3'- -CGGGGCGCGaa---CugCcaGUCCC--AGCA- -5'
5546 5' -60 NC_001806.1 + 20661 0.69 0.60898
Target:  5'- gGCCCCcgGCGUgccgGcguCGGggCGGGGUCGUg -3'
miRNA:   3'- -CGGGG--CGCGaa--Cu--GCCa-GUCCCAGCA- -5'
5546 5' -60 NC_001806.1 + 3485 0.69 0.606017
Target:  5'- cGCCCgGCGUcgUcgucggcgucggcgUGGCGGgcggcgUCGGGGUCGUc -3'
miRNA:   3'- -CGGGgCGCG--A--------------ACUGCC------AGUCCCAGCA- -5'
5546 5' -60 NC_001806.1 + 5060 0.69 0.589261
Target:  5'- gGCCCCcCGCUcGucGCGGUCuGGGcUCGg -3'
miRNA:   3'- -CGGGGcGCGAaC--UGCCAGuCCC-AGCa -5'
5546 5' -60 NC_001806.1 + 20979 0.69 0.559916
Target:  5'- aGUUCCGCGUc-GACGGcgGGGGUCGUc -3'
miRNA:   3'- -CGGGGCGCGaaCUGCCagUCCCAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.