miRNA display CGI


Results 61 - 80 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 52704 0.7 0.756706
Target:  5'- aCCCGGAGguUccggAGGCGCCGcgcggacGGCgCGGGg -3'
miRNA:   3'- gGGGUCUCguA----UUUGUGGU-------CCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 111200 0.7 0.757659
Target:  5'- gCCCuGGGgAUAGcCugCGcGGCCGGGg -3'
miRNA:   3'- gGGGuCUCgUAUUuGugGU-CCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 6075 0.7 0.757659
Target:  5'- cCCCgGGGGCG--GGC-CCGGGCggCGGGg -3'
miRNA:   3'- -GGGgUCUCGUauUUGuGGUCCG--GCCC- -5'
5547 5' -55.3 NC_001806.1 + 86010 0.7 0.767126
Target:  5'- cUCCCGGGG-----GCGCUuGGCCGGGg -3'
miRNA:   3'- -GGGGUCUCguauuUGUGGuCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 150985 0.7 0.767126
Target:  5'- gCCCAcGAGCcgcggcGCGCCAGGCgGGcGg -3'
miRNA:   3'- gGGGU-CUCGuauu--UGUGGUCCGgCC-C- -5'
5547 5' -55.3 NC_001806.1 + 26683 0.7 0.776474
Target:  5'- gCCCCGGcccccaccgcccGGCGUGGGC-CCGGGgggCGGGg -3'
miRNA:   3'- -GGGGUC------------UCGUAUUUGuGGUCCg--GCCC- -5'
5547 5' -55.3 NC_001806.1 + 109222 0.7 0.776474
Target:  5'- cUCCCuuAGCGUGGG-GCCGGGCgGGGc -3'
miRNA:   3'- -GGGGucUCGUAUUUgUGGUCCGgCCC- -5'
5547 5' -55.3 NC_001806.1 + 124692 0.7 0.776474
Target:  5'- cCCCCGGAGCuguuggugAAAUACCuuaacaacgaacGGGCCGa- -3'
miRNA:   3'- -GGGGUCUCGua------UUUGUGG------------UCCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 55280 0.7 0.785694
Target:  5'- gCCCAGAGCAcgugGGGguCCguuAGGuuGGGg -3'
miRNA:   3'- gGGGUCUCGUa---UUUguGG---UCCggCCC- -5'
5547 5' -55.3 NC_001806.1 + 126010 0.69 0.793875
Target:  5'- gCCCCAGuggcugaAGCAc-AACGCCAgccugcGGCCGGa -3'
miRNA:   3'- -GGGGUC-------UCGUauUUGUGGU------CCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 104678 0.69 0.794777
Target:  5'- -aCCAGGGUG-AGAUAUC-GGCCGGGg -3'
miRNA:   3'- ggGGUCUCGUaUUUGUGGuCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 101833 0.69 0.794777
Target:  5'- uUCCAGGGCgGUGAggcGCACCAGcGCCGc- -3'
miRNA:   3'- gGGGUCUCG-UAUU---UGUGGUC-CGGCcc -5'
5547 5' -55.3 NC_001806.1 + 10684 0.69 0.803714
Target:  5'- cCCCCGGucGCAg----AUgGGGCCGGGg -3'
miRNA:   3'- -GGGGUCu-CGUauuugUGgUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 59616 0.69 0.803714
Target:  5'- gCgCCGGGGCcuugGGGC-CCcGGCCGGGu -3'
miRNA:   3'- -GgGGUCUCGua--UUUGuGGuCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 20600 0.69 0.803714
Target:  5'- gCCCAuGGCAgauGGCgcggauggGCgGGGCCGGGg -3'
miRNA:   3'- gGGGUcUCGUau-UUG--------UGgUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 13656 0.69 0.803714
Target:  5'- cCCCCGGAGgGUcggucAGCugguCCAGGaCCGGa -3'
miRNA:   3'- -GGGGUCUCgUAu----UUGu---GGUCC-GGCCc -5'
5547 5' -55.3 NC_001806.1 + 56506 0.69 0.803714
Target:  5'- aCCUGGGGCcacAGCGgCAGGCCcGGGc -3'
miRNA:   3'- gGGGUCUCGuauUUGUgGUCCGG-CCC- -5'
5547 5' -55.3 NC_001806.1 + 57494 0.69 0.812497
Target:  5'- aCCCgAGGGUggGGGCGCCAGGCa--- -3'
miRNA:   3'- -GGGgUCUCGuaUUUGUGGUCCGgccc -5'
5547 5' -55.3 NC_001806.1 + 115230 0.69 0.812497
Target:  5'- cCCCCGGGGac---GCGCC--GCCGGGg -3'
miRNA:   3'- -GGGGUCUCguauuUGUGGucCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 147209 0.69 0.820262
Target:  5'- gCCCCGGcGGCGgaagAGGCgGCCcccgcggGGGUCGGGg -3'
miRNA:   3'- -GGGGUC-UCGUa---UUUG-UGG-------UCCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.