miRNA display CGI


Results 61 - 80 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 17776 0.68 0.876272
Target:  5'- aCCCCAGAcGCGUGggUgggagaACCguGGGCCGu- -3'
miRNA:   3'- -GGGGUCU-CGUAUuuG------UGG--UCCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 56926 0.68 0.876272
Target:  5'- uCCCCAGGGUGccGACgaaCAGGggccCCGGGg -3'
miRNA:   3'- -GGGGUCUCGUauUUGug-GUCC----GGCCC- -5'
5547 5' -55.3 NC_001806.1 + 140039 0.68 0.876272
Target:  5'- gCCCGGAGC------GCCAcGGCCGGc -3'
miRNA:   3'- gGGGUCUCGuauuugUGGU-CCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 4131 0.68 0.876272
Target:  5'- cCCCCAGAgGCccGGGCGgcugucgcCCAGGCCGc- -3'
miRNA:   3'- -GGGGUCU-CGuaUUUGU--------GGUCCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 99758 0.68 0.876272
Target:  5'- cCUCCGGGG----GACAaaGGGCCGGGu -3'
miRNA:   3'- -GGGGUCUCguauUUGUggUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 38817 0.68 0.868996
Target:  5'- aCCCGGgcgGGgGUGGAUACgCuGGCUGGGu -3'
miRNA:   3'- gGGGUC---UCgUAUUUGUG-GuCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 7259 0.68 0.868996
Target:  5'- uCCCCAGGacaccGCGUGuuCcCCGGGagccCCGGGu -3'
miRNA:   3'- -GGGGUCU-----CGUAUuuGuGGUCC----GGCCC- -5'
5547 5' -55.3 NC_001806.1 + 113142 0.68 0.868996
Target:  5'- gCCUgGGGGCA---GCGCCuGGCCcacGGGc -3'
miRNA:   3'- -GGGgUCUCGUauuUGUGGuCCGG---CCC- -5'
5547 5' -55.3 NC_001806.1 + 120888 0.68 0.868996
Target:  5'- cCCCCGGggaccuugccccGGCcgGAuucCCGGGCCGGa -3'
miRNA:   3'- -GGGGUC------------UCGuaUUuguGGUCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 149767 0.68 0.866772
Target:  5'- gCCCCAGA-CAU-GGCGCCcGGCCccucaccucgcgcuGGGg -3'
miRNA:   3'- -GGGGUCUcGUAuUUGUGGuCCGG--------------CCC- -5'
5547 5' -55.3 NC_001806.1 + 1764 0.68 0.861508
Target:  5'- gCgCGGGGaCAUGGGCACCGGcguguCCGGGc -3'
miRNA:   3'- gGgGUCUC-GUAUUUGUGGUCc----GGCCC- -5'
5547 5' -55.3 NC_001806.1 + 43218 0.68 0.861508
Target:  5'- uUCUCGGGGCu---AUAUguGGCUGGGg -3'
miRNA:   3'- -GGGGUCUCGuauuUGUGguCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 147788 0.68 0.861508
Target:  5'- gCCCGGGGCGggGGGCggaGCCuGGCaUGGGc -3'
miRNA:   3'- gGGGUCUCGUa-UUUG---UGGuCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 150808 0.68 0.861508
Target:  5'- uCCCgGGAGCuccgcggaAGAC-CCAGGCCGccucGGg -3'
miRNA:   3'- -GGGgUCUCGua------UUUGuGGUCCGGC----CC- -5'
5547 5' -55.3 NC_001806.1 + 20182 0.68 0.861508
Target:  5'- cCCCCGGGGCc--GGCGCgGaGUCGGGc -3'
miRNA:   3'- -GGGGUCUCGuauUUGUGgUcCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 64978 0.68 0.861508
Target:  5'- gUCCCGGGGCA--AACAUCcagGGGCgCGGu -3'
miRNA:   3'- -GGGGUCUCGUauUUGUGG---UCCG-GCCc -5'
5547 5' -55.3 NC_001806.1 + 124084 0.68 0.861508
Target:  5'- uCCCCGGGGCccgAAGCuuCGGGggguCUGGGg -3'
miRNA:   3'- -GGGGUCUCGua-UUUGugGUCC----GGCCC- -5'
5547 5' -55.3 NC_001806.1 + 129090 0.68 0.861508
Target:  5'- -gCCAGGuGCGUGAcugugguccgcGCGCCaaugGGGUCGGGa -3'
miRNA:   3'- ggGGUCU-CGUAUU-----------UGUGG----UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 93476 0.68 0.853815
Target:  5'- gCCCUGGAG-GUGGcGCACgAGGCCGaGGc -3'
miRNA:   3'- -GGGGUCUCgUAUU-UGUGgUCCGGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 77988 0.68 0.853815
Target:  5'- aCCCCAGAGCuc---CACUAGGCa--- -3'
miRNA:   3'- -GGGGUCUCGuauuuGUGGUCCGgccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.