miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 62613 0.67 0.903167
Target:  5'- uCgCCGGAGgggguggGUGGGCuCCAGGCaCGGGa -3'
miRNA:   3'- -GgGGUCUCg------UAUUUGuGGUCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 34420 0.67 0.896783
Target:  5'- -gCCGG-GCcgG---GCCGGGCCGGGu -3'
miRNA:   3'- ggGGUCuCGuaUuugUGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 150605 0.67 0.896783
Target:  5'- gCCCAuuGGGCGguaacuccCGCCcaauGGGCCGGGc -3'
miRNA:   3'- gGGGU--CUCGUauuu----GUGG----UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 147976 0.67 0.896783
Target:  5'- cCCCCGGAGgGgccAGACGCCccccgcGGcGCCGcGGc -3'
miRNA:   3'- -GGGGUCUCgUa--UUUGUGG------UC-CGGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 112136 0.67 0.896783
Target:  5'- uCCUCGGGGCGUuuGAGCGCgGcacGGCCGa- -3'
miRNA:   3'- -GGGGUCUCGUA--UUUGUGgU---CCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 144916 0.67 0.894823
Target:  5'- gCCCGGGGCcugagAUGAACACuCGggguuaccgccaacGGCCGGc -3'
miRNA:   3'- gGGGUCUCG-----UAUUUGUG-GU--------------CCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 30601 0.67 0.894823
Target:  5'- gCCaagAGGGCGgcgacGCACCcccccuccgacucaGGGCCGGGg -3'
miRNA:   3'- gGGg--UCUCGUauu--UGUGG--------------UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 3145 0.67 0.89017
Target:  5'- gCCCAGGGCcccGGCgACCAGGCucaCGGc -3'
miRNA:   3'- gGGGUCUCGuauUUG-UGGUCCG---GCCc -5'
5547 5' -55.3 NC_001806.1 + 147111 0.67 0.89017
Target:  5'- gCCCAGaAGCA---GCGCgGGGgCCGaGGg -3'
miRNA:   3'- gGGGUC-UCGUauuUGUGgUCC-GGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 135844 0.67 0.89017
Target:  5'- aUCCAGGGa--GggUACCGucgacGGCCGGGg -3'
miRNA:   3'- gGGGUCUCguaUuuGUGGU-----CCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 27340 0.67 0.89017
Target:  5'- gCCCAuuGGGCGgGAGuuacCGCCcaauGGGCCGGGc -3'
miRNA:   3'- gGGGU--CUCGUaUUU----GUGG----UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 10385 0.67 0.89017
Target:  5'- aCCUCgggGGGGCGgggGGAgGCgGGaGCCGGGg -3'
miRNA:   3'- -GGGG---UCUCGUa--UUUgUGgUC-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 27996 0.67 0.89017
Target:  5'- aCUCGGAGCG-AGACgcagcaGCCAGGCagacuCGGGc -3'
miRNA:   3'- gGGGUCUCGUaUUUG------UGGUCCG-----GCCC- -5'
5547 5' -55.3 NC_001806.1 + 9898 0.67 0.886094
Target:  5'- gCCCCAG-GCGUGAAUauggucguugacguACaccacacacagauaCAGGCCGGa -3'
miRNA:   3'- -GGGGUCuCGUAUUUG--------------UG--------------GUCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 103314 0.67 0.883332
Target:  5'- gUCCAGAGCGUcaAAugGgCAGuaCGGGu -3'
miRNA:   3'- gGGGUCUCGUA--UUugUgGUCcgGCCC- -5'
5547 5' -55.3 NC_001806.1 + 2720 0.67 0.883332
Target:  5'- gCCCAGGGgGUcgGgGCCcucggcGGGCCGGc -3'
miRNA:   3'- gGGGUCUCgUAuuUgUGG------UCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 4728 0.67 0.883332
Target:  5'- cUCCCGuucGCG---GCcCCGGGCCGGGg -3'
miRNA:   3'- -GGGGUcu-CGUauuUGuGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 127450 0.67 0.883332
Target:  5'- -aCCAGA-CAU--ACACCAcGGUCGGGu -3'
miRNA:   3'- ggGGUCUcGUAuuUGUGGU-CCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 52566 0.67 0.883332
Target:  5'- cCCCCGGA-CGacAugGCCAgcGGCCcGGGg -3'
miRNA:   3'- -GGGGUCUcGUauUugUGGU--CCGG-CCC- -5'
5547 5' -55.3 NC_001806.1 + 17776 0.68 0.876272
Target:  5'- aCCCCAGAcGCGUGggUgggagaACCguGGGCCGu- -3'
miRNA:   3'- -GGGGUCU-CGUAUuuG------UGG--UCCGGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.