miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 24494 0.66 0.931571
Target:  5'- uCCCCGcgcGAGUAc---CGCCGGGCCGu- -3'
miRNA:   3'- -GGGGU---CUCGUauuuGUGGUCCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 25506 0.74 0.556949
Target:  5'- cCCCCgagGGAGCGcGGgacGCGCCggggagggcugGGGCCGGGg -3'
miRNA:   3'- -GGGG---UCUCGUaUU---UGUGG-----------UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 26683 0.7 0.776474
Target:  5'- gCCCCGGcccccaccgcccGGCGUGGGC-CCGGGgggCGGGg -3'
miRNA:   3'- -GGGGUC------------UCGUAUUUGuGGUCCg--GCCC- -5'
5547 5' -55.3 NC_001806.1 + 26792 0.66 0.928475
Target:  5'- aCCgCGGAGCAccugGcgcgccugcgccugcGACGCgCGGGCgGGGa -3'
miRNA:   3'- -GGgGUCUCGUa---U---------------UUGUG-GUCCGgCCC- -5'
5547 5' -55.3 NC_001806.1 + 27340 0.67 0.89017
Target:  5'- gCCCAuuGGGCGgGAGuuacCGCCcaauGGGCCGGGc -3'
miRNA:   3'- gGGGU--CUCGUaUUU----GUGG----UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 27698 0.72 0.648241
Target:  5'- gCCCCGGGGCAccGACG-CAGGCCa-- -3'
miRNA:   3'- -GGGGUCUCGUauUUGUgGUCCGGccc -5'
5547 5' -55.3 NC_001806.1 + 27996 0.67 0.89017
Target:  5'- aCUCGGAGCG-AGACgcagcaGCCAGGCagacuCGGGc -3'
miRNA:   3'- gGGGUCUCGUaUUUG------UGGUCCG-----GCCC- -5'
5547 5' -55.3 NC_001806.1 + 28134 0.7 0.748081
Target:  5'- gCCCCGGAGCgaGUAccCGCC-GGCCugaGGGc -3'
miRNA:   3'- -GGGGUCUCG--UAUuuGUGGuCCGG---CCC- -5'
5547 5' -55.3 NC_001806.1 + 28168 0.69 0.837837
Target:  5'- cCCCCAGcGCG-AggUGagGGGCCGGGc -3'
miRNA:   3'- -GGGGUCuCGUaUuuGUggUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 29430 0.75 0.517421
Target:  5'- cCCCCAGAcccGCAUGGAgGCCgaggAGGCCGucaGGg -3'
miRNA:   3'- -GGGGUCU---CGUAUUUgUGG----UCCGGC---CC- -5'
5547 5' -55.3 NC_001806.1 + 30238 0.66 0.941275
Target:  5'- gCCCC-GuGCGUgcGAGCGCCGccuCCGGGg -3'
miRNA:   3'- -GGGGuCuCGUA--UUUGUGGUcc-GGCCC- -5'
5547 5' -55.3 NC_001806.1 + 30287 0.67 0.903167
Target:  5'- cCCCCGGGGCGga---GCC-GGCCGc- -3'
miRNA:   3'- -GGGGUCUCGUauuugUGGuCCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 30601 0.67 0.894823
Target:  5'- gCCaagAGGGCGgcgacGCACCcccccuccgacucaGGGCCGGGg -3'
miRNA:   3'- gGGg--UCUCGUauu--UGUGG--------------UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 32425 0.73 0.605428
Target:  5'- cCCCCAGgcaguaagacccaAGCAUAGAgaGCCAGGCacaaaaacacaggCGGGg -3'
miRNA:   3'- -GGGGUC-------------UCGUAUUUg-UGGUCCG-------------GCCC- -5'
5547 5' -55.3 NC_001806.1 + 32940 0.66 0.926364
Target:  5'- gCgCCGGGcCGUugugGGGCcCCGGGCCGGGn -3'
miRNA:   3'- -GgGGUCUcGUA----UUUGuGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 32971 0.73 0.577045
Target:  5'- gCCCCuuGGGuccGCcgGGGCcCCGGGCCGGGc -3'
miRNA:   3'- -GGGG--UCU---CGuaUUUGuGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 33031 0.77 0.414677
Target:  5'- aCCCC-GAGUGUucaucucAGGCcCCGGGCCGGGa -3'
miRNA:   3'- -GGGGuCUCGUA-------UUUGuGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 34351 0.72 0.638046
Target:  5'- cCCCCGGGGaacgGGGgACCGGGgCUGGGu -3'
miRNA:   3'- -GGGGUCUCgua-UUUgUGGUCC-GGCCC- -5'
5547 5' -55.3 NC_001806.1 + 34381 0.75 0.517421
Target:  5'- aUCCCGagguggguggguGGGCGgcgGugGCCGGGCCGGGc -3'
miRNA:   3'- -GGGGU------------CUCGUau-UugUGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 34420 0.67 0.896783
Target:  5'- -gCCGG-GCcgG---GCCGGGCCGGGu -3'
miRNA:   3'- ggGGUCuCGuaUuugUGGUCCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.