miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 121401 0.78 0.349643
Target:  5'- cCCCCGGAGCcgGGcgcgugcuGCGCCuuGGGCCcGGGg -3'
miRNA:   3'- -GGGGUCUCGuaUU--------UGUGG--UCCGG-CCC- -5'
5547 5' -55.3 NC_001806.1 + 73440 0.78 0.334372
Target:  5'- gCCCGGAcGCAc--AC-CCAGGCCGGGg -3'
miRNA:   3'- gGGGUCU-CGUauuUGuGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 77100 0.8 0.278233
Target:  5'- -aCCAGGGCGUccugggcgccaaGAGCGCCgagcGGGCCGGGg -3'
miRNA:   3'- ggGGUCUCGUA------------UUUGUGG----UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 101916 0.81 0.2531
Target:  5'- gCCCCGccuGGGCGUcaAGACacagggcgGCCAGGCCGGGa -3'
miRNA:   3'- -GGGGU---CUCGUA--UUUG--------UGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 140120 0.81 0.235499
Target:  5'- cCCCCAGAGg--AGACGCCAGGCgCGGc -3'
miRNA:   3'- -GGGGUCUCguaUUUGUGGUCCG-GCCc -5'
5547 5' -55.3 NC_001806.1 + 4179 0.76 0.460409
Target:  5'- cCCCgGGGGCGgGGGC-CCGGcGCCGGGc -3'
miRNA:   3'- -GGGgUCUCGUaUUUGuGGUC-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 50644 0.75 0.479061
Target:  5'- gCCCGG-GCGUGcggggacgcGCACCGGcGCCGGGa -3'
miRNA:   3'- gGGGUCuCGUAUu--------UGUGGUC-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 64950 0.73 0.587154
Target:  5'- aCCaCC--GGCGUcgGCGcCCGGGCCGGGg -3'
miRNA:   3'- -GG-GGucUCGUAuuUGU-GGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 59110 0.73 0.586142
Target:  5'- aCCCCAcagugacgagguGGGCuucggugGUGAggGCAgCCGGGCCGGGg -3'
miRNA:   3'- -GGGGU------------CUCG-------UAUU--UGU-GGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 32971 0.73 0.577045
Target:  5'- gCCCCuuGGGuccGCcgGGGCcCCGGGCCGGGc -3'
miRNA:   3'- -GGGG--UCU---CGuaUUUGuGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 25506 0.74 0.556949
Target:  5'- cCCCCgagGGAGCGcGGgacGCGCCggggagggcugGGGCCGGGg -3'
miRNA:   3'- -GGGG---UCUCGUaUU---UGUGG-----------UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 135067 0.74 0.556949
Target:  5'- cCCCgCGGGGac---GCGCCGGGCCGGa -3'
miRNA:   3'- -GGG-GUCUCguauuUGUGGUCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 73969 0.74 0.527206
Target:  5'- gCCCCucGGCGUAAugccCGCCccGGCCGGGg -3'
miRNA:   3'- -GGGGucUCGUAUUu---GUGGu-CCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 21303 0.74 0.526224
Target:  5'- cCCCCGcggcGGGCAccGACGCCGGcgaggacGCCGGGg -3'
miRNA:   3'- -GGGGU----CUCGUauUUGUGGUC-------CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 151259 0.75 0.517421
Target:  5'- cCCCCGGgcccacgccgGGCgGUGGGgGCCgGGGCCGGGg -3'
miRNA:   3'- -GGGGUC----------UCG-UAUUUgUGG-UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 34381 0.75 0.517421
Target:  5'- aUCCCGagguggguggguGGGCGgcgGugGCCGGGCCGGGc -3'
miRNA:   3'- -GGGGU------------CUCGUau-UugUGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 29430 0.75 0.517421
Target:  5'- cCCCCAGAcccGCAUGGAgGCCgaggAGGCCGucaGGg -3'
miRNA:   3'- -GGGGUCU---CGUAUUUgUGG----UCCGGC---CC- -5'
5547 5' -55.3 NC_001806.1 + 39183 0.75 0.511585
Target:  5'- gCCCCGGGGCGgcGGC-CUugucugcguucuuggGGGCCGGGc -3'
miRNA:   3'- -GGGGUCUCGUauUUGuGG---------------UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 57017 0.75 0.498076
Target:  5'- gCCCAGugccaGGCAcugGGugGCCGGGCCcGGGg -3'
miRNA:   3'- gGGGUC-----UCGUa--UUugUGGUCCGG-CCC- -5'
5547 5' -55.3 NC_001806.1 + 103946 0.75 0.488525
Target:  5'- aCgCGGAGCGUccguugggcgacAAACACCAGGaCGGGg -3'
miRNA:   3'- gGgGUCUCGUA------------UUUGUGGUCCgGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.