miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 9099 0.71 0.698859
Target:  5'- cCCCCGGAGCcaccGAGCggccaGCCAGGCgacaaacaGGGa -3'
miRNA:   3'- -GGGGUCUCGua--UUUG-----UGGUCCGg-------CCC- -5'
5547 5' -55.3 NC_001806.1 + 9708 0.72 0.648241
Target:  5'- aCCCCAGuGCAgacAGCAgCAGGgCGGc -3'
miRNA:   3'- -GGGGUCuCGUau-UUGUgGUCCgGCCc -5'
5547 5' -55.3 NC_001806.1 + 9898 0.67 0.886094
Target:  5'- gCCCCAG-GCGUGAAUauggucguugacguACaccacacacagauaCAGGCCGGa -3'
miRNA:   3'- -GGGGUCuCGUAUUUG--------------UG--------------GUCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 10385 0.67 0.89017
Target:  5'- aCCUCgggGGGGCGgggGGAgGCgGGaGCCGGGg -3'
miRNA:   3'- -GGGG---UCUCGUa--UUUgUGgUC-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 10684 0.69 0.803714
Target:  5'- cCCCCGGucGCAg----AUgGGGCCGGGg -3'
miRNA:   3'- -GGGGUCu-CGUauuugUGgUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 11875 0.66 0.926364
Target:  5'- uCgCCGGGGCc-AGACGCgGGGCCGa- -3'
miRNA:   3'- -GgGGUCUCGuaUUUGUGgUCCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 12383 0.67 0.90932
Target:  5'- aCCgUGGGGCcacGGACaACCAGGCUGGu -3'
miRNA:   3'- -GGgGUCUCGua-UUUG-UGGUCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 12419 0.77 0.389113
Target:  5'- aCCCAGAGgccCAcGAGCACCAGGCCcugcaacGGGc -3'
miRNA:   3'- gGGGUCUC---GUaUUUGUGGUCCGG-------CCC- -5'
5547 5' -55.3 NC_001806.1 + 13656 0.69 0.803714
Target:  5'- cCCCCGGAGgGUcggucAGCugguCCAGGaCCGGa -3'
miRNA:   3'- -GGGGUCUCgUAu----UUGu---GGUCC-GGCCc -5'
5547 5' -55.3 NC_001806.1 + 17776 0.68 0.876272
Target:  5'- aCCCCAGAcGCGUGggUgggagaACCguGGGCCGu- -3'
miRNA:   3'- -GGGGUCU-CGUAUuuG------UGG--UCCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 18072 0.71 0.688811
Target:  5'- gUCCCAgacGAGCAacccacauCGCCGGGCCGuGGu -3'
miRNA:   3'- -GGGGU---CUCGUauuu----GUGGUCCGGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 19011 0.68 0.845923
Target:  5'- -aCUGGcGCAUGuAGC-CCAGGUCGGGg -3'
miRNA:   3'- ggGGUCuCGUAU-UUGuGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 20182 0.68 0.861508
Target:  5'- cCCCCGGGGCc--GGCGCgGaGUCGGGc -3'
miRNA:   3'- -GGGGUCUCGuauUUGUGgUcCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 20600 0.69 0.803714
Target:  5'- gCCCAuGGCAgauGGCgcggauggGCgGGGCCGGGg -3'
miRNA:   3'- gGGGUcUCGUau-UUG--------UGgUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 20662 0.67 0.903167
Target:  5'- gCCCCc-GGCGUGccGGCGUCGGGgCGGGg -3'
miRNA:   3'- -GGGGucUCGUAU--UUGUGGUCCgGCCC- -5'
5547 5' -55.3 NC_001806.1 + 21303 0.74 0.526224
Target:  5'- cCCCCGcggcGGGCAccGACGCCGGcgaggacGCCGGGg -3'
miRNA:   3'- -GGGGU----CUCGUauUUGUGGUC-------CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 22078 0.71 0.718778
Target:  5'- cCCCCGGGGCGgguGCugUAcggcGGCCuGGGc -3'
miRNA:   3'- -GGGGUCUCGUauuUGugGU----CCGG-CCC- -5'
5547 5' -55.3 NC_001806.1 + 22180 0.71 0.708851
Target:  5'- gCCCCGGcGGCcguGUGGGCGCCcGaGCUGGGc -3'
miRNA:   3'- -GGGGUC-UCG---UAUUUGUGGuC-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 22301 0.7 0.745187
Target:  5'- uCCCCGGGGaCGUGGcgcuGgACCAGGCCugcuuccggaucucGGGc -3'
miRNA:   3'- -GGGGUCUC-GUAUU----UgUGGUCCGG--------------CCC- -5'
5547 5' -55.3 NC_001806.1 + 22398 0.69 0.829566
Target:  5'- gCCCCAccuGGGCu---ACGCCAuggcGGCCGGc -3'
miRNA:   3'- -GGGGU---CUCGuauuUGUGGU----CCGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.