miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 34381 0.75 0.517421
Target:  5'- aUCCCGagguggguggguGGGCGgcgGugGCCGGGCCGGGc -3'
miRNA:   3'- -GGGGU------------CUCGUau-UugUGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 29430 0.75 0.517421
Target:  5'- cCCCCAGAcccGCAUGGAgGCCgaggAGGCCGucaGGg -3'
miRNA:   3'- -GGGGUCU---CGUAUUUgUGG----UCCGGC---CC- -5'
5547 5' -55.3 NC_001806.1 + 21303 0.74 0.526224
Target:  5'- cCCCCGcggcGGGCAccGACGCCGGcgaggacGCCGGGg -3'
miRNA:   3'- -GGGGU----CUCGUauUUGUGGUC-------CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 73969 0.74 0.527206
Target:  5'- gCCCCucGGCGUAAugccCGCCccGGCCGGGg -3'
miRNA:   3'- -GGGGucUCGUAUUu---GUGGu-CCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 135067 0.74 0.556949
Target:  5'- cCCCgCGGGGac---GCGCCGGGCCGGa -3'
miRNA:   3'- -GGG-GUCUCguauuUGUGGUCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 25506 0.74 0.556949
Target:  5'- cCCCCgagGGAGCGcGGgacGCGCCggggagggcugGGGCCGGGg -3'
miRNA:   3'- -GGGG---UCUCGUaUU---UGUGG-----------UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 32971 0.73 0.577045
Target:  5'- gCCCCuuGGGuccGCcgGGGCcCCGGGCCGGGc -3'
miRNA:   3'- -GGGG--UCU---CGuaUUUGuGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 59110 0.73 0.586142
Target:  5'- aCCCCAcagugacgagguGGGCuucggugGUGAggGCAgCCGGGCCGGGg -3'
miRNA:   3'- -GGGGU------------CUCG-------UAUU--UGU-GGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 64950 0.73 0.587154
Target:  5'- aCCaCC--GGCGUcgGCGcCCGGGCCGGGg -3'
miRNA:   3'- -GG-GGucUCGUAuuUGU-GGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 32425 0.73 0.605428
Target:  5'- cCCCCAGgcaguaagacccaAGCAUAGAgaGCCAGGCacaaaaacacaggCGGGg -3'
miRNA:   3'- -GGGGUC-------------UCGUAUUUg-UGGUCCG-------------GCCC- -5'
5547 5' -55.3 NC_001806.1 + 103764 0.73 0.617649
Target:  5'- gCCCCAGAGUGUGAccuuuucggucuGCugCAGacccCCGGGc -3'
miRNA:   3'- -GGGGUCUCGUAUU------------UGugGUCc---GGCCC- -5'
5547 5' -55.3 NC_001806.1 + 37783 0.73 0.617649
Target:  5'- gCUCCGGGGCcgGGGCGCggggguccgCGGGCgGGGg -3'
miRNA:   3'- -GGGGUCUCGuaUUUGUG---------GUCCGgCCC- -5'
5547 5' -55.3 NC_001806.1 + 34351 0.72 0.638046
Target:  5'- cCCCCGGGGaacgGGGgACCGGGgCUGGGu -3'
miRNA:   3'- -GGGGUCUCgua-UUUgUGGUCC-GGCCC- -5'
5547 5' -55.3 NC_001806.1 + 130442 0.72 0.638046
Target:  5'- gCCCAGcGCGaucuacggGAGCugCGGuGCCGGGa -3'
miRNA:   3'- gGGGUCuCGUa-------UUUGugGUC-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 9708 0.72 0.648241
Target:  5'- aCCCCAGuGCAgacAGCAgCAGGgCGGc -3'
miRNA:   3'- -GGGGUCuCGUau-UUGUgGUCCgGCCc -5'
5547 5' -55.3 NC_001806.1 + 27698 0.72 0.648241
Target:  5'- gCCCCGGGGCAccGACG-CAGGCCa-- -3'
miRNA:   3'- -GGGGUCUCGUauUUGUgGUCCGGccc -5'
5547 5' -55.3 NC_001806.1 + 2831 0.72 0.658423
Target:  5'- cCCCgGGGGCGUGgaggGGgGCgCGGGCgCGGGg -3'
miRNA:   3'- -GGGgUCUCGUAU----UUgUG-GUCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 3654 0.72 0.658423
Target:  5'- cCCCCucguCAUcuGCGCCGGcGCCGGGg -3'
miRNA:   3'- -GGGGucucGUAuuUGUGGUC-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 66765 0.72 0.658423
Target:  5'- gCCCCAGcucGGCGUccagguccacGAACGCaCAuGCCGGGa -3'
miRNA:   3'- -GGGGUC---UCGUA----------UUUGUG-GUcCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 1542 0.72 0.668585
Target:  5'- cCUCCGcGGCccgcgcCACCGGGCCGGGc -3'
miRNA:   3'- -GGGGUcUCGuauuu-GUGGUCCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.