miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 3221 0.66 0.936541
Target:  5'- uCCCCgcgcAGGcGCAUGAGCACCAGcGCg--- -3'
miRNA:   3'- -GGGG----UCU-CGUAUUUGUGGUC-CGgccc -5'
5547 5' -55.3 NC_001806.1 + 64327 0.66 0.945334
Target:  5'- gUCCAGAGCcUGGGCcaggaucACCAG-CUGGGc -3'
miRNA:   3'- gGGGUCUCGuAUUUG-------UGGUCcGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 117806 0.66 0.920919
Target:  5'- aCCCGGAcGCcgcgAAACGCCccgggaugcaGGGCCaGGa -3'
miRNA:   3'- gGGGUCU-CGua--UUUGUGG----------UCCGGcCC- -5'
5547 5' -55.3 NC_001806.1 + 138808 0.66 0.931571
Target:  5'- cCCCCGgcGAGCGUGcguuugauuuuaAGCAacUgGGGCCGcGGg -3'
miRNA:   3'- -GGGGU--CUCGUAU------------UUGU--GgUCCGGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 55248 0.66 0.920919
Target:  5'- --aCGGAGgGUcgGCGcCCGGGCCGGc -3'
miRNA:   3'- gggGUCUCgUAuuUGU-GGUCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 67154 0.66 0.926364
Target:  5'- aCCCCAGGGCGgucGccuccaucagcuGGCcCCAGGCCu-- -3'
miRNA:   3'- -GGGGUCUCGUa--U------------UUGuGGUCCGGccc -5'
5547 5' -55.3 NC_001806.1 + 76324 0.66 0.941275
Target:  5'- aCCCGGcGGCGgccgccGAGCuuguCCGGGCaGGGg -3'
miRNA:   3'- gGGGUC-UCGUa-----UUUGu---GGUCCGgCCC- -5'
5547 5' -55.3 NC_001806.1 + 100380 0.66 0.931571
Target:  5'- cUCCCGucgccGGGCG---GCGCgGgGGCCGGGg -3'
miRNA:   3'- -GGGGU-----CUCGUauuUGUGgU-CCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 89859 0.67 0.914656
Target:  5'- aCCCGGAGCAccugaccgUAAGCAUCuGuGCCucucgcaGGGa -3'
miRNA:   3'- gGGGUCUCGU--------AUUUGUGGuC-CGG-------CCC- -5'
5547 5' -55.3 NC_001806.1 + 75697 0.67 0.915237
Target:  5'- gCCCgCAGuAGCcacGAGCGCUGGGCCGc- -3'
miRNA:   3'- -GGG-GUC-UCGua-UUUGUGGUCCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 150874 0.67 0.90932
Target:  5'- gCUCCGcGGGCcaGGGC-CCGGGCaCGGGc -3'
miRNA:   3'- -GGGGU-CUCGuaUUUGuGGUCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 3145 0.67 0.89017
Target:  5'- gCCCAGGGCcccGGCgACCAGGCucaCGGc -3'
miRNA:   3'- gGGGUCUCGuauUUG-UGGUCCG---GCCc -5'
5547 5' -55.3 NC_001806.1 + 52566 0.67 0.883332
Target:  5'- cCCCCGGA-CGacAugGCCAgcGGCCcGGGg -3'
miRNA:   3'- -GGGGUCUcGUauUugUGGU--CCGG-CCC- -5'
5547 5' -55.3 NC_001806.1 + 150412 0.67 0.90932
Target:  5'- aCCCCAGGGgaGUGGuuACGCgC-GGCgCGGGa -3'
miRNA:   3'- -GGGGUCUCg-UAUU--UGUG-GuCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 27996 0.67 0.89017
Target:  5'- aCUCGGAGCG-AGACgcagcaGCCAGGCagacuCGGGc -3'
miRNA:   3'- gGGGUCUCGUaUUUG------UGGUCCG-----GCCC- -5'
5547 5' -55.3 NC_001806.1 + 10385 0.67 0.89017
Target:  5'- aCCUCgggGGGGCGgggGGAgGCgGGaGCCGGGg -3'
miRNA:   3'- -GGGG---UCUCGUa--UUUgUGgUC-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 144916 0.67 0.894823
Target:  5'- gCCCGGGGCcugagAUGAACACuCGggguuaccgccaacGGCCGGc -3'
miRNA:   3'- gGGGUCUCG-----UAUUUGUG-GU--------------CCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 103145 0.67 0.915237
Target:  5'- uCUCCAGGGCAgcGGCAgCCGcuguGcGCUGGGc -3'
miRNA:   3'- -GGGGUCUCGUauUUGU-GGU----C-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 78329 0.67 0.915237
Target:  5'- uCCCCGagcugggaaccGAGCGc-GGCGCCGcGCUGGGa -3'
miRNA:   3'- -GGGGU-----------CUCGUauUUGUGGUcCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 27340 0.67 0.89017
Target:  5'- gCCCAuuGGGCGgGAGuuacCGCCcaauGGGCCGGGc -3'
miRNA:   3'- gGGGU--CUCGUaUUU----GUGG----UCCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.