miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 138808 0.66 0.931571
Target:  5'- cCCCCGgcGAGCGUGcguuugauuuuaAGCAacUgGGGCCGcGGg -3'
miRNA:   3'- -GGGGU--CUCGUAU------------UUGU--GgUCCGGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 135844 0.67 0.89017
Target:  5'- aUCCAGGGa--GggUACCGucgacGGCCGGGg -3'
miRNA:   3'- gGGGUCUCguaUuuGUGGU-----CCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 135067 0.74 0.556949
Target:  5'- cCCCgCGGGGac---GCGCCGGGCCGGa -3'
miRNA:   3'- -GGG-GUCUCguauuUGUGGUCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 132997 0.71 0.728631
Target:  5'- cCCUCAGAGCc------CUGGGCCGGGg -3'
miRNA:   3'- -GGGGUCUCGuauuuguGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 131975 0.76 0.424305
Target:  5'- gCCCUGGAGCGcc-AgACCGGGCCGGu -3'
miRNA:   3'- -GGGGUCUCGUauuUgUGGUCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 130442 0.72 0.638046
Target:  5'- gCCCAGcGCGaucuacggGAGCugCGGuGCCGGGa -3'
miRNA:   3'- gGGGUCuCGUa-------UUUGugGUC-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 129090 0.68 0.861508
Target:  5'- -gCCAGGuGCGUGAcugugguccgcGCGCCaaugGGGUCGGGa -3'
miRNA:   3'- ggGGUCU-CGUAUU-----------UGUGG----UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 127926 0.66 0.945774
Target:  5'- gCCgAGGGCAaAGGCggcgACCAGGgCGaGGg -3'
miRNA:   3'- gGGgUCUCGUaUUUG----UGGUCCgGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 127450 0.67 0.883332
Target:  5'- -aCCAGA-CAU--ACACCAcGGUCGGGu -3'
miRNA:   3'- ggGGUCUcGUAuuUGUGGU-CCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 126010 0.69 0.793875
Target:  5'- gCCCCAGuggcugaAGCAc-AACGCCAgccugcGGCCGGa -3'
miRNA:   3'- -GGGGUC-------UCGUauUUGUGGU------CCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 124692 0.7 0.776474
Target:  5'- cCCCCGGAGCuguuggugAAAUACCuuaacaacgaacGGGCCGa- -3'
miRNA:   3'- -GGGGUCUCGua------UUUGUGG------------UCCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 124084 0.68 0.861508
Target:  5'- uCCCCGGGGCccgAAGCuuCGGGggguCUGGGg -3'
miRNA:   3'- -GGGGUCUCGua-UUUGugGUCC----GGCCC- -5'
5547 5' -55.3 NC_001806.1 + 121401 0.78 0.349643
Target:  5'- cCCCCGGAGCcgGGcgcgugcuGCGCCuuGGGCCcGGGg -3'
miRNA:   3'- -GGGGUCUCGuaUU--------UGUGG--UCCGG-CCC- -5'
5547 5' -55.3 NC_001806.1 + 120888 0.68 0.868996
Target:  5'- cCCCCGGggaccuugccccGGCcgGAuucCCGGGCCGGa -3'
miRNA:   3'- -GGGGUC------------UCGuaUUuguGGUCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 119521 0.71 0.718778
Target:  5'- aCgCCAGGGCGcccugGuuCACCAGGCCgucagcGGGg -3'
miRNA:   3'- -GgGGUCUCGUa----UuuGUGGUCCGG------CCC- -5'
5547 5' -55.3 NC_001806.1 + 117806 0.66 0.920919
Target:  5'- aCCCGGAcGCcgcgAAACGCCccgggaugcaGGGCCaGGa -3'
miRNA:   3'- gGGGUCU-CGua--UUUGUGG----------UCCGGcCC- -5'
5547 5' -55.3 NC_001806.1 + 115230 0.69 0.812497
Target:  5'- cCCCCGGGGac---GCGCC--GCCGGGg -3'
miRNA:   3'- -GGGGUCUCguauuUGUGGucCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 113380 0.66 0.941275
Target:  5'- gUCCGGcGGCGUuccgGGACGCCcgGGGCCuGGa -3'
miRNA:   3'- gGGGUC-UCGUA----UUUGUGG--UCCGGcCC- -5'
5547 5' -55.3 NC_001806.1 + 113142 0.68 0.868996
Target:  5'- gCCUgGGGGCA---GCGCCuGGCCcacGGGc -3'
miRNA:   3'- -GGGgUCUCGUauuUGUGGuCCGG---CCC- -5'
5547 5' -55.3 NC_001806.1 + 112136 0.67 0.896783
Target:  5'- uCCUCGGGGCGUuuGAGCGCgGcacGGCCGa- -3'
miRNA:   3'- -GGGGUCUCGUA--UUUGUGgU---CCGGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.