miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 151259 0.75 0.517421
Target:  5'- cCCCCGGgcccacgccgGGCgGUGGGgGCCgGGGCCGGGg -3'
miRNA:   3'- -GGGGUC----------UCG-UAUUUgUGG-UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 150985 0.7 0.767126
Target:  5'- gCCCAcGAGCcgcggcGCGCCAGGCgGGcGg -3'
miRNA:   3'- gGGGU-CUCGuauu--UGUGGUCCGgCC-C- -5'
5547 5' -55.3 NC_001806.1 + 150874 0.67 0.90932
Target:  5'- gCUCCGcGGGCcaGGGC-CCGGGCaCGGGc -3'
miRNA:   3'- -GGGGU-CUCGuaUUUGuGGUCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 150808 0.68 0.861508
Target:  5'- uCCCgGGAGCuccgcggaAGAC-CCAGGCCGccucGGg -3'
miRNA:   3'- -GGGgUCUCGua------UUUGuGGUCCGGC----CC- -5'
5547 5' -55.3 NC_001806.1 + 150605 0.67 0.896783
Target:  5'- gCCCAuuGGGCGguaacuccCGCCcaauGGGCCGGGc -3'
miRNA:   3'- gGGGU--CUCGUauuu----GUGG----UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 150412 0.67 0.90932
Target:  5'- aCCCCAGGGgaGUGGuuACGCgC-GGCgCGGGa -3'
miRNA:   3'- -GGGGUCUCg-UAUU--UGUG-GuCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 149767 0.68 0.866772
Target:  5'- gCCCCAGA-CAU-GGCGCCcGGCCccucaccucgcgcuGGGg -3'
miRNA:   3'- -GGGGUCUcGUAuUUGUGGuCCGG--------------CCC- -5'
5547 5' -55.3 NC_001806.1 + 147976 0.67 0.896783
Target:  5'- cCCCCGGAGgGgccAGACGCCccccgcGGcGCCGcGGc -3'
miRNA:   3'- -GGGGUCUCgUa--UUUGUGG------UC-CGGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 147788 0.68 0.861508
Target:  5'- gCCCGGGGCGggGGGCggaGCCuGGCaUGGGc -3'
miRNA:   3'- gGGGUCUCGUa-UUUG---UGGuCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 147707 0.66 0.930549
Target:  5'- gCCCCGGAgGCGgcgcucgcacGCACgGGGCCacggccgcgcGGGg -3'
miRNA:   3'- -GGGGUCU-CGUauu-------UGUGgUCCGG----------CCC- -5'
5547 5' -55.3 NC_001806.1 + 147681 0.76 0.433174
Target:  5'- cCCCgGGGGCcgGGGCGCgGGGgCGGGc -3'
miRNA:   3'- -GGGgUCUCGuaUUUGUGgUCCgGCCC- -5'
5547 5' -55.3 NC_001806.1 + 147209 0.69 0.820262
Target:  5'- gCCCCGGcGGCGgaagAGGCgGCCcccgcggGGGUCGGGg -3'
miRNA:   3'- -GGGGUC-UCGUa---UUUG-UGG-------UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 147111 0.67 0.89017
Target:  5'- gCCCAGaAGCA---GCGCgGGGgCCGaGGg -3'
miRNA:   3'- gGGGUC-UCGUauuUGUGgUCC-GGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 146664 0.66 0.945774
Target:  5'- uCCCCGGAccacggguGCcgAGAC-CgCAGGCUGcGGa -3'
miRNA:   3'- -GGGGUCU--------CGuaUUUGuG-GUCCGGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 144916 0.67 0.894823
Target:  5'- gCCCGGGGCcugagAUGAACACuCGggguuaccgccaacGGCCGGc -3'
miRNA:   3'- gGGGUCUCG-----UAUUUGUG-GU--------------CCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 144265 0.69 0.837837
Target:  5'- gCCCAGAGuCAUuguuUAUguGGCCGcGGg -3'
miRNA:   3'- gGGGUCUC-GUAuuu-GUGguCCGGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 142017 0.66 0.920919
Target:  5'- cCUCUAGGGCGgcgagGAGCGCC--GCCGGc -3'
miRNA:   3'- -GGGGUCUCGUa----UUUGUGGucCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 141401 1.13 0.001982
Target:  5'- gCCCCAGAGCAUAAACACCAGGCCGGGg -3'
miRNA:   3'- -GGGGUCUCGUAUUUGUGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 140120 0.81 0.235499
Target:  5'- cCCCCAGAGg--AGACGCCAGGCgCGGc -3'
miRNA:   3'- -GGGGUCUCguaUUUGUGGUCCG-GCCc -5'
5547 5' -55.3 NC_001806.1 + 140039 0.68 0.876272
Target:  5'- gCCCGGAGC------GCCAcGGCCGGc -3'
miRNA:   3'- gGGGUCUCGuauuugUGGU-CCGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.