miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 3' -56.2 NC_001806.1 + 44732 0.66 0.895676
Target:  5'- -cCCGGCCCCGguugGAGGggGGGG-CGCc -3'
miRNA:   3'- caGGUCGGGGUg---CUCCgaUCUUaGCG- -5'
5548 3' -56.2 NC_001806.1 + 49099 0.68 0.818376
Target:  5'- -gUCGGCucgcgaaCCCGCGGGGCgcaggAGGcgCGCa -3'
miRNA:   3'- caGGUCG-------GGGUGCUCCGa----UCUuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 53882 0.7 0.665549
Target:  5'- --gCAGCCgCGCGGGGaucAGggUCGCc -3'
miRNA:   3'- cagGUCGGgGUGCUCCga-UCuuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 57138 0.66 0.908352
Target:  5'- aUCCgcgcggugGGCCgCGCGAGGggAGGGggugCGCg -3'
miRNA:   3'- cAGG--------UCGGgGUGCUCCgaUCUUa---GCG- -5'
5548 3' -56.2 NC_001806.1 + 66533 0.68 0.79266
Target:  5'- -gCCAGgCCCGCGAGGg-GGAAgUCGg -3'
miRNA:   3'- caGGUCgGGGUGCUCCgaUCUU-AGCg -5'
5548 3' -56.2 NC_001806.1 + 67211 0.67 0.844284
Target:  5'- -gCCGGCCUgGCGGGGCg-----CGCu -3'
miRNA:   3'- caGGUCGGGgUGCUCCGaucuuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 67618 0.66 0.902131
Target:  5'- cUCCcGCCCCACacGGaaGGggUUGCg -3'
miRNA:   3'- cAGGuCGGGGUGcuCCgaUCuuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 68393 0.68 0.819239
Target:  5'- -aCCGGgCCCACG-GGCUuccGGAGacggCGCu -3'
miRNA:   3'- caGGUCgGGGUGCuCCGA---UCUUa---GCG- -5'
5548 3' -56.2 NC_001806.1 + 70521 0.71 0.655329
Target:  5'- -cCUGGCCCCcCGAGGCcaugGGGGaCGCg -3'
miRNA:   3'- caGGUCGGGGuGCUCCGa---UCUUaGCG- -5'
5548 3' -56.2 NC_001806.1 + 73168 0.68 0.783499
Target:  5'- cGUCCucacaGGCCCU-CGAGGCgcugaAGAcUCGCc -3'
miRNA:   3'- -CAGG-----UCGGGGuGCUCCGa----UCUuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 73360 0.66 0.882079
Target:  5'- aUCCGGCCUCucCGGGGCUgcuGGAGcUCuGUg -3'
miRNA:   3'- cAGGUCGGGGu-GCUCCGA---UCUU-AG-CG- -5'
5548 3' -56.2 NC_001806.1 + 77287 0.66 0.902764
Target:  5'- -cCUGGCCCCAUG-GGCgguggaggaguuccgGGGcgCGCg -3'
miRNA:   3'- caGGUCGGGGUGCuCCGa--------------UCUuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 81097 0.71 0.613324
Target:  5'- -aCCAGCCUacauCACGugcgcauguuacuGGGCUAGAcgCGCu -3'
miRNA:   3'- caGGUCGGG----GUGC-------------UCCGAUCUuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 81266 0.66 0.908352
Target:  5'- cUCCccgGGCCUCACGGGGUcccgGGcGUCGa -3'
miRNA:   3'- cAGG---UCGGGGUGCUCCGa---UCuUAGCg -5'
5548 3' -56.2 NC_001806.1 + 85954 0.68 0.801676
Target:  5'- -aCCAGCagCUUGCGGGGCuUGGAcgCGCc -3'
miRNA:   3'- caGGUCG--GGGUGCUCCG-AUCUuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 86346 0.69 0.755233
Target:  5'- cUgCAGUCCCuCG-GGCaGGggUCGCg -3'
miRNA:   3'- cAgGUCGGGGuGCuCCGaUCuuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 86956 0.66 0.901496
Target:  5'- uGUCCaggagcacGGCCuCCuCGGGGCUgcucuggGGAAUcCGCg -3'
miRNA:   3'- -CAGG--------UCGG-GGuGCUCCGA-------UCUUA-GCG- -5'
5548 3' -56.2 NC_001806.1 + 87025 0.66 0.893695
Target:  5'- -gCCAGUCCCGCaggaggaugcugagGAGGCUcuc-UCGCa -3'
miRNA:   3'- caGGUCGGGGUG--------------CUCCGAucuuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 88964 0.7 0.706067
Target:  5'- gGUCCAcgccGCCCCAC-AGGCgcGAG-CGCc -3'
miRNA:   3'- -CAGGU----CGGGGUGcUCCGauCUUaGCG- -5'
5548 3' -56.2 NC_001806.1 + 89117 0.86 0.090005
Target:  5'- cGUCCAGCaCCCGCGGGGCgauGAAUCGa -3'
miRNA:   3'- -CAGGUCG-GGGUGCUCCGau-CUUAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.