Results 61 - 80 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 4722 | 0.68 | 0.549004 |
Target: 5'- cGGGGcCUCCCguUCgcggCCCCgGGCcgggGCCCg -3' miRNA: 3'- uCCCUuGAGGG--AGa---GGGGgCUG----CGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 52655 | 0.68 | 0.549004 |
Target: 5'- --cGAGCcCCCgcccCUCCCCCGAccuCGCCUa -3' miRNA: 3'- uccCUUGaGGGa---GAGGGGGCU---GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 23804 | 0.68 | 0.549004 |
Target: 5'- cGGGGGC-CgCCUCUuuggcCCCCUGcGCGCCUc -3' miRNA: 3'- uCCCUUGaG-GGAGA-----GGGGGC-UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 116424 | 0.68 | 0.549004 |
Target: 5'- cGGGGAC-CCCaUCagCCUCGuccCGCCCg -3' miRNA: 3'- uCCCUUGaGGG-AGagGGGGCu--GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 109045 | 0.68 | 0.558562 |
Target: 5'- gAGGGGGCUcaggCCCaacgCggCCCCGAuaaaCGCCCg -3' miRNA: 3'- -UCCCUUGA----GGGa---GagGGGGCU----GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 74009 | 0.68 | 0.568166 |
Target: 5'- cAGGGGGCUCCgCgcccaCcCCCCCuGgGCCCc -3' miRNA: 3'- -UCCCUUGAGG-Ga----GaGGGGGcUgCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 151243 | 0.68 | 0.568166 |
Target: 5'- gAGGGGucaGC-CCCgC-CCCCCGG-GCCCa -3' miRNA: 3'- -UCCCU---UGaGGGaGaGGGGGCUgCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 134171 | 0.68 | 0.568166 |
Target: 5'- gAGGcGcGCgcaC-CUCCUCCGACGCCCa -3' miRNA: 3'- -UCC-CuUGaggGaGAGGGGGCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 6097 | 0.68 | 0.558562 |
Target: 5'- cGGGGGGCgggUCUCUCcggcgcacauaaaggCCCggcgcgaCCGACGCCCg -3' miRNA: 3'- -UCCCUUG---AGGGAGa--------------GGG-------GGCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 149562 | 0.69 | 0.502083 |
Target: 5'- cAGGGggUUCCg-CaCCCCCuaacauGGCGCCCc -3' miRNA: 3'- -UCCCuuGAGGgaGaGGGGG------CUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 120856 | 0.69 | 0.520659 |
Target: 5'- -uGGGAC-CCCggcggCCCCUGGCGCCg -3' miRNA: 3'- ucCCUUGaGGGaga--GGGGGCUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 96457 | 0.69 | 0.520659 |
Target: 5'- cGGcGGCUCCgagUUCCCCCGgcACGCCUg -3' miRNA: 3'- uCCcUUGAGGga-GAGGGGGC--UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 71087 | 0.69 | 0.511336 |
Target: 5'- gGGGGGACUacagCCUCggCCCCCuGgGCCa -3' miRNA: 3'- -UCCCUUGAg---GGAGa-GGGGGcUgCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 49797 | 0.69 | 0.511336 |
Target: 5'- uGGGGGucaugcACUUCgC-CUCCCCCGACaacCCCg -3' miRNA: 3'- -UCCCU------UGAGG-GaGAGGGGGCUGc--GGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 2287 | 0.69 | 0.492904 |
Target: 5'- cGGcGGAccACUCCggCggccCCCCCGAgGCCCc -3' miRNA: 3'- -UC-CCU--UGAGGgaGa---GGGGGCUgCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 123764 | 0.69 | 0.502083 |
Target: 5'- cGGGcgccccagcGGC-CCCUCUCUCCagGACGCCg -3' miRNA: 3'- uCCC---------UUGaGGGAGAGGGGg-CUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 17133 | 0.7 | 0.431017 |
Target: 5'- -----cCUCCC-CUCCCCCGgACGCCUc -3' miRNA: 3'- ucccuuGAGGGaGAGGGGGC-UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 147909 | 0.7 | 0.431017 |
Target: 5'- aAGGGGGC-CCgUCcggCCCCuCGGcCGCCCc -3' miRNA: 3'- -UCCCUUGaGGgAGa--GGGG-GCU-GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 147133 | 0.7 | 0.439584 |
Target: 5'- gAGGGAGguuuccucuuguCUCCCUC-CCagggcaCCGACgGCCCc -3' miRNA: 3'- -UCCCUU------------GAGGGAGaGGg-----GGCUG-CGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 112880 | 0.7 | 0.465848 |
Target: 5'- cGGGGACcuagUCCC-CgCCCCCGGCcaCCCg -3' miRNA: 3'- uCCCUUG----AGGGaGaGGGGGCUGc-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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