Results 41 - 60 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 126763 | 0.67 | 0.616686 |
Target: 5'- cAGGGcuacgugcucGACagCCaCUUCCCCGACuGCCCc -3' miRNA: 3'- -UCCC----------UUGagGGaGAGGGGGCUG-CGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 78923 | 0.67 | 0.645974 |
Target: 5'- --cGAGCggCCC-CUCgCCCGGgGCCCg -3' miRNA: 3'- uccCUUGa-GGGaGAGgGGGCUgCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 125318 | 0.67 | 0.645974 |
Target: 5'- cGaGGAcAC-CCCUCguggCCCCGACaGCCCc -3' miRNA: 3'- uC-CCU-UGaGGGAGag--GGGGCUG-CGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 136927 | 0.67 | 0.636212 |
Target: 5'- gGGGGAGCacagcgcuUCCgUgUCCCCCcGCGCa- -3' miRNA: 3'- -UCCCUUG--------AGGgAgAGGGGGcUGCGgg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 30740 | 0.67 | 0.636212 |
Target: 5'- cGGGGGC-CgCCUCUUCCgCCGccggggccGCGUCCu -3' miRNA: 3'- uCCCUUGaG-GGAGAGGG-GGC--------UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 6818 | 0.67 | 0.636212 |
Target: 5'- -cGGAGCgUCCCcugcugcgCUCUCCCGGgcugcUGCCCg -3' miRNA: 3'- ucCCUUG-AGGGa-------GAGGGGGCU-----GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 53233 | 0.67 | 0.630353 |
Target: 5'- gGGGGGAUccgCCCUauuuuccCCCCCGGgccgcaccgggccccCGCCCc -3' miRNA: 3'- -UCCCUUGa--GGGAga-----GGGGGCU---------------GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 38031 | 0.67 | 0.626447 |
Target: 5'- cGGGAccaccGCgacCCCga-CCCCugCGACGCCCa -3' miRNA: 3'- uCCCU-----UGa--GGGagaGGGG--GCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 50280 | 0.67 | 0.626447 |
Target: 5'- cGGGGcccuGCUCgCCcgCUUcaaUCCCGACGCCg -3' miRNA: 3'- -UCCCu---UGAG-GGa-GAG---GGGGCUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 30263 | 0.67 | 0.626447 |
Target: 5'- cGGGg---CCCgg-CCCCCG-CGCCCc -3' miRNA: 3'- uCCCuugaGGGagaGGGGGCuGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 6334 | 0.67 | 0.625471 |
Target: 5'- cAGGGGACgcacCCCgggggCCUCCGACGacagaaaCCCa -3' miRNA: 3'- -UCCCUUGa---GGGaga--GGGGGCUGC-------GGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 93915 | 0.67 | 0.626447 |
Target: 5'- aGGGGGAC-CCCggggCUCagCCaGACGCCg -3' miRNA: 3'- -UCCCUUGaGGGa---GAGg-GGgCUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 147298 | 0.68 | 0.587492 |
Target: 5'- cAGGGGGgUCCCgggCcCaCCCUGgccGCGCCCc -3' miRNA: 3'- -UCCCUUgAGGGa--GaG-GGGGC---UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 14759 | 0.68 | 0.587492 |
Target: 5'- uGGGcuCUCCCcaUCCCCCG-C-CCCa -3' miRNA: 3'- uCCCuuGAGGGagAGGGGGCuGcGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 84981 | 0.68 | 0.586522 |
Target: 5'- cGGGGccuuuucGCcgCCCUCgCCCa-GACGCCCu -3' miRNA: 3'- uCCCU-------UGa-GGGAGaGGGggCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 5017 | 0.68 | 0.577812 |
Target: 5'- cGGGGucgUCCCcgccCUCCUCCGucuccGCGCCCc -3' miRNA: 3'- -UCCCuugAGGGa---GAGGGGGC-----UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 74009 | 0.68 | 0.568166 |
Target: 5'- cAGGGGGCUCCgCgcccaCcCCCCCuGgGCCCc -3' miRNA: 3'- -UCCCUUGAGG-Ga----GaGGGGGcUgCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 151243 | 0.68 | 0.568166 |
Target: 5'- gAGGGGucaGC-CCCgC-CCCCCGG-GCCCa -3' miRNA: 3'- -UCCCU---UGaGGGaGaGGGGGCUgCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 6097 | 0.68 | 0.558562 |
Target: 5'- cGGGGGGCgggUCUCUCcggcgcacauaaaggCCCggcgcgaCCGACGCCCg -3' miRNA: 3'- -UCCCUUG---AGGGAGa--------------GGG-------GGCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 109045 | 0.68 | 0.558562 |
Target: 5'- gAGGGGGCUcaggCCCaacgCggCCCCGAuaaaCGCCCg -3' miRNA: 3'- -UCCCUUGA----GGGa---GagGGGGCU----GCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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