Results 41 - 60 of 112 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 104035 | 0.75 | 0.224545 |
Target: 5'- cAGGGAguggcgcaGCUgCUUCaUCCCCGugGCCCg -3' miRNA: 3'- -UCCCU--------UGAgGGAGaGGGGGCugCGGG- -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 58999 | 0.76 | 0.190374 |
Target: 5'- cAGGGcGC-CCC-CUCCUCCGGCuGCCCg -3' miRNA: 3'- -UCCCuUGaGGGaGAGGGGGCUG-CGGG- -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 7398 | 0.76 | 0.185882 |
Target: 5'- cAGGGAGC-CCCggUCUCCCCgGGaGCCCc -3' miRNA: 3'- -UCCCUUGaGGG--AGAGGGGgCUgCGGG- -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 146614 | 0.76 | 0.184553 |
Target: 5'- cGGGGGGCgucccuuauuguuuUCCCUCgUCCCgggUCGACGCCCc -3' miRNA: 3'- -UCCCUUG--------------AGGGAG-AGGG---GGCUGCGGG- -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 69245 | 0.82 | 0.078005 |
Target: 5'- cGGGGAGCagCC-CUCCgCCGGCGCCCa -3' miRNA: 3'- -UCCCUUGagGGaGAGGgGGCUGCGGG- -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 19722 | 0.72 | 0.329234 |
Target: 5'- cGGGuGAGCcCCCUCcuccgCCCCCG-CGUCCc -3' miRNA: 3'- -UCC-CUUGaGGGAGa----GGGGGCuGCGGG- -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 3678 | 0.72 | 0.351074 |
Target: 5'- -cGGGGCUCCC-CgcggCCCCCGucaGCGCCg -3' miRNA: 3'- ucCCUUGAGGGaGa---GGGGGC---UGCGGg -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 17133 | 0.7 | 0.431017 |
Target: 5'- -----cCUCCC-CUCCCCCGgACGCCUc -3' miRNA: 3'- ucccuuGAGGGaGAGGGGGC-UGCGGG- -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 106693 | 0.7 | 0.42255 |
Target: 5'- cGGGGGCucuUCCCgggCCCCCgGGCgGCCCc -3' miRNA: 3'- uCCCUUG---AGGGagaGGGGG-CUG-CGGG- -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 113299 | 0.71 | 0.414183 |
Target: 5'- gGGGGGACg----UUCCCCCGGCcgGCCCg -3' miRNA: 3'- -UCCCUUGagggaGAGGGGGCUG--CGGG- -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 5236 | 0.71 | 0.414183 |
Target: 5'- gAGGGGGCgagaCCCaCggaCCCCGACGaCCCc -3' miRNA: 3'- -UCCCUUGa---GGGaGag-GGGGCUGC-GGG- -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 26712 | 0.71 | 0.40592 |
Target: 5'- cGGGGGGCggggcugacCCCUCccacCCCCCcucGCGCCCc -3' miRNA: 3'- -UCCCUUGa--------GGGAGa---GGGGGc--UGCGGG- -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 5125 | 0.71 | 0.39776 |
Target: 5'- cGGGGcGCUgCUUgUUCUCCGACGCCa -3' miRNA: 3'- -UCCCuUGAgGGAgAGGGGGCUGCGGg -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 133395 | 0.71 | 0.39776 |
Target: 5'- uGGGGGAUUUCCUCUCCgCgG--GCCCg -3' miRNA: 3'- -UCCCUUGAGGGAGAGGgGgCugCGGG- -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 48266 | 0.71 | 0.389707 |
Target: 5'- gAGGGccuGCUCgaUCUCCCggacgaCGACGCCCc -3' miRNA: 3'- -UCCCu--UGAGggAGAGGGg-----GCUGCGGG- -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 97510 | 0.71 | 0.381761 |
Target: 5'- cGGcGGCUCCUuccgauUCUCUUCCGACGCCa -3' miRNA: 3'- uCCcUUGAGGG------AGAGGGGGCUGCGGg -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 140448 | 0.71 | 0.373923 |
Target: 5'- gGGGGGGCgguuaCUCggCCCCCGAgGCCa -3' miRNA: 3'- -UCCCUUGagg--GAGa-GGGGGCUgCGGg -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 22924 | 0.71 | 0.373923 |
Target: 5'- gAGGGAcccGCgggCCCcgCUUCCCCGccGCGCCg -3' miRNA: 3'- -UCCCU---UGa--GGGa-GAGGGGGC--UGCGGg -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 96515 | 0.71 | 0.373146 |
Target: 5'- cGGGGGcccugccacuccgGCgccgCCCg--CCCCUGGCGCCCc -3' miRNA: 3'- -UCCCU-------------UGa---GGGagaGGGGGCUGCGGG- -5' |
|||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 118903 | 0.72 | 0.366196 |
Target: 5'- gGGGGAGCUUCUgg-CCCCCGuCGUgCCg -3' miRNA: 3'- -UCCCUUGAGGGagaGGGGGCuGCG-GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home