miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 49797 0.69 0.511336
Target:  5'- uGGGGGucaugcACUUCgC-CUCCCCCGACaacCCCg -3'
miRNA:   3'- -UCCCU------UGAGG-GaGAGGGGGCUGc--GGG- -5'
5548 5' -61.7 NC_001806.1 + 96457 0.69 0.520659
Target:  5'- cGGcGGCUCCgagUUCCCCCGgcACGCCUg -3'
miRNA:   3'- uCCcUUGAGGga-GAGGGGGC--UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 120856 0.69 0.520659
Target:  5'- -uGGGAC-CCCggcggCCCCUGGCGCCg -3'
miRNA:   3'- ucCCUUGaGGGaga--GGGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 30117 0.68 0.539498
Target:  5'- ---cGACUCCCccccggccUCUCCCCacaggccccccgCGGCGCCCa -3'
miRNA:   3'- ucccUUGAGGG--------AGAGGGG------------GCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 116424 0.68 0.549004
Target:  5'- cGGGGAC-CCCaUCagCCUCGuccCGCCCg -3'
miRNA:   3'- uCCCUUGaGGG-AGagGGGGCu--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 23804 0.68 0.549004
Target:  5'- cGGGGGC-CgCCUCUuuggcCCCCUGcGCGCCUc -3'
miRNA:   3'- uCCCUUGaG-GGAGA-----GGGGGC-UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 52655 0.68 0.549004
Target:  5'- --cGAGCcCCCgcccCUCCCCCGAccuCGCCUa -3'
miRNA:   3'- uccCUUGaGGGa---GAGGGGGCU---GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 4722 0.68 0.549004
Target:  5'- cGGGGcCUCCCguUCgcggCCCCgGGCcgggGCCCg -3'
miRNA:   3'- uCCCUuGAGGG--AGa---GGGGgCUG----CGGG- -5'
5548 5' -61.7 NC_001806.1 + 120818 0.68 0.549004
Target:  5'- uGGGGuuugCCCUC-CCCCCGcC-CCCg -3'
miRNA:   3'- -UCCCuugaGGGAGaGGGGGCuGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 65443 0.68 0.549004
Target:  5'- aAGGGAGCgggggaugCCgCgg-CCCCCGgguccuggggGCGCCCg -3'
miRNA:   3'- -UCCCUUGa-------GG-GagaGGGGGC----------UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 73528 0.68 0.558562
Target:  5'- uGGGGGACUUUCUggCCUCCacGCGCCUg -3'
miRNA:   3'- -UCCCUUGAGGGAgaGGGGGc-UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 109045 0.68 0.558562
Target:  5'- gAGGGGGCUcaggCCCaacgCggCCCCGAuaaaCGCCCg -3'
miRNA:   3'- -UCCCUUGA----GGGa---GagGGGGCU----GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 6097 0.68 0.558562
Target:  5'- cGGGGGGCgggUCUCUCcggcgcacauaaaggCCCggcgcgaCCGACGCCCg -3'
miRNA:   3'- -UCCCUUG---AGGGAGa--------------GGG-------GGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 74009 0.68 0.568166
Target:  5'- cAGGGGGCUCCgCgcccaCcCCCCCuGgGCCCc -3'
miRNA:   3'- -UCCCUUGAGG-Ga----GaGGGGGcUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 151243 0.68 0.568166
Target:  5'- gAGGGGucaGC-CCCgC-CCCCCGG-GCCCa -3'
miRNA:   3'- -UCCCU---UGaGGGaGaGGGGGCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 134171 0.68 0.568166
Target:  5'- gAGGcGcGCgcaC-CUCCUCCGACGCCCa -3'
miRNA:   3'- -UCC-CuUGaggGaGAGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 5017 0.68 0.577812
Target:  5'- cGGGGucgUCCCcgccCUCCUCCGucuccGCGCCCc -3'
miRNA:   3'- -UCCCuugAGGGa---GAGGGGGC-----UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 84981 0.68 0.586522
Target:  5'- cGGGGccuuuucGCcgCCCUCgCCCa-GACGCCCu -3'
miRNA:   3'- uCCCU-------UGa-GGGAGaGGGggCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 14759 0.68 0.587492
Target:  5'- uGGGcuCUCCCcaUCCCCCG-C-CCCa -3'
miRNA:   3'- uCCCuuGAGGGagAGGGGGCuGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 147298 0.68 0.587492
Target:  5'- cAGGGGGgUCCCgggCcCaCCCUGgccGCGCCCc -3'
miRNA:   3'- -UCCCUUgAGGGa--GaG-GGGGC---UGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.