miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 97510 0.71 0.381761
Target:  5'- cGGcGGCUCCUuccgauUCUCUUCCGACGCCa -3'
miRNA:   3'- uCCcUUGAGGG------AGAGGGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 48266 0.71 0.389707
Target:  5'- gAGGGccuGCUCgaUCUCCCggacgaCGACGCCCc -3'
miRNA:   3'- -UCCCu--UGAGggAGAGGGg-----GCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 133395 0.71 0.39776
Target:  5'- uGGGGGAUUUCCUCUCCgCgG--GCCCg -3'
miRNA:   3'- -UCCCUUGAGGGAGAGGgGgCugCGGG- -5'
5548 5' -61.7 NC_001806.1 + 5125 0.71 0.39776
Target:  5'- cGGGGcGCUgCUUgUUCUCCGACGCCa -3'
miRNA:   3'- -UCCCuUGAgGGAgAGGGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 26712 0.71 0.40592
Target:  5'- cGGGGGGCggggcugacCCCUCccacCCCCCcucGCGCCCc -3'
miRNA:   3'- -UCCCUUGa--------GGGAGa---GGGGGc--UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 113299 0.71 0.414183
Target:  5'- gGGGGGACg----UUCCCCCGGCcgGCCCg -3'
miRNA:   3'- -UCCCUUGagggaGAGGGGGCUG--CGGG- -5'
5548 5' -61.7 NC_001806.1 + 5236 0.71 0.414183
Target:  5'- gAGGGGGCgagaCCCaCggaCCCCGACGaCCCc -3'
miRNA:   3'- -UCCCUUGa---GGGaGag-GGGGCUGC-GGG- -5'
5548 5' -61.7 NC_001806.1 + 106693 0.7 0.42255
Target:  5'- cGGGGGCucuUCCCgggCCCCCgGGCgGCCCc -3'
miRNA:   3'- uCCCUUG---AGGGagaGGGGG-CUG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 17133 0.7 0.431017
Target:  5'- -----cCUCCC-CUCCCCCGgACGCCUc -3'
miRNA:   3'- ucccuuGAGGGaGAGGGGGC-UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 147909 0.7 0.431017
Target:  5'- aAGGGGGC-CCgUCcggCCCCuCGGcCGCCCc -3'
miRNA:   3'- -UCCCUUGaGGgAGa--GGGG-GCU-GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 80166 0.7 0.439584
Target:  5'- cAGG----UCCCUCUCCCCCGcCuCCCg -3'
miRNA:   3'- -UCCcuugAGGGAGAGGGGGCuGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 147133 0.7 0.439584
Target:  5'- gAGGGAGguuuccucuuguCUCCCUC-CCagggcaCCGACgGCCCc -3'
miRNA:   3'- -UCCCUU------------GAGGGAGaGGg-----GGCUG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 148242 0.7 0.451737
Target:  5'- cGGGGGGCgcgaucagguuacgCCCcCUCCCCgGccCGCCCu -3'
miRNA:   3'- -UCCCUUGa-------------GGGaGAGGGGgCu-GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 120259 0.7 0.457002
Target:  5'- gAGGGGA---CCg--CCCCCGACGCCUu -3'
miRNA:   3'- -UCCCUUgagGGagaGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 30642 0.7 0.460529
Target:  5'- gGGGGGGCgcggccagggugggCCCgggaCcCCCCUGACGUCCu -3'
miRNA:   3'- -UCCCUUGa-------------GGGa---GaGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 112880 0.7 0.465848
Target:  5'- cGGGGACcuagUCCC-CgCCCCCGGCcaCCCg -3'
miRNA:   3'- uCCCUUG----AGGGaGaGGGGGCUGc-GGG- -5'
5548 5' -61.7 NC_001806.1 + 2287 0.69 0.492904
Target:  5'- cGGcGGAccACUCCggCggccCCCCCGAgGCCCc -3'
miRNA:   3'- -UC-CCU--UGAGGgaGa---GGGGGCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 123764 0.69 0.502083
Target:  5'- cGGGcgccccagcGGC-CCCUCUCUCCagGACGCCg -3'
miRNA:   3'- uCCC---------UUGaGGGAGAGGGGg-CUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 149562 0.69 0.502083
Target:  5'- cAGGGggUUCCg-CaCCCCCuaacauGGCGCCCc -3'
miRNA:   3'- -UCCCuuGAGGgaGaGGGGG------CUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 71087 0.69 0.511336
Target:  5'- gGGGGGACUacagCCUCggCCCCCuGgGCCa -3'
miRNA:   3'- -UCCCUUGAg---GGAGa-GGGGGcUgCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.