Results 21 - 40 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 22724 | 0.66 | 0.694489 |
Target: 5'- cGGGGGGCga-Cga--CCCCGACGCCg -3' miRNA: 3'- -UCCCUUGaggGagagGGGGCUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 102960 | 0.66 | 0.68485 |
Target: 5'- cGGGGGCgCC----CCCCCGuCGCCCc -3' miRNA: 3'- uCCCUUGaGGgagaGGGGGCuGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 79172 | 0.66 | 0.666434 |
Target: 5'- gGGGGAGCuauUCCCggggcaUCcgguguaccagcgcgCCCCCGACGaCCa -3' miRNA: 3'- -UCCCUUG---AGGG------AGa--------------GGGGGCUGCgGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 83328 | 0.66 | 0.674202 |
Target: 5'- uGGGGAgggGCUuuuggacaccgggCCCUUUUCCgCGGCGgCCa -3' miRNA: 3'- -UCCCU---UGA-------------GGGAGAGGGgGCUGCgGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 47030 | 0.67 | 0.616686 |
Target: 5'- uGGGggUUUUCUCUUCCC--GCGCCg -3' miRNA: 3'- uCCCuuGAGGGAGAGGGGgcUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 65201 | 0.67 | 0.613759 |
Target: 5'- cGGGGccGACUggauccCCCUCcCCCCCGaauaccgcagagcgGCGCCg -3' miRNA: 3'- -UCCC--UUGA------GGGAGaGGGGGC--------------UGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 30263 | 0.67 | 0.626447 |
Target: 5'- cGGGg---CCCgg-CCCCCG-CGCCCc -3' miRNA: 3'- uCCCuugaGGGagaGGGGGCuGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 6818 | 0.67 | 0.636212 |
Target: 5'- -cGGAGCgUCCCcugcugcgCUCUCCCGGgcugcUGCCCg -3' miRNA: 3'- ucCCUUG-AGGGa-------GAGGGGGCU-----GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 53233 | 0.67 | 0.630353 |
Target: 5'- gGGGGGAUccgCCCUauuuuccCCCCCGGgccgcaccgggccccCGCCCc -3' miRNA: 3'- -UCCCUUGa--GGGAga-----GGGGGCU---------------GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 38031 | 0.67 | 0.626447 |
Target: 5'- cGGGAccaccGCgacCCCga-CCCCugCGACGCCCa -3' miRNA: 3'- uCCCU-----UGa--GGGagaGGGG--GCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 6334 | 0.67 | 0.625471 |
Target: 5'- cAGGGGACgcacCCCgggggCCUCCGACGacagaaaCCCa -3' miRNA: 3'- -UCCCUUGa---GGGaga--GGGGGCUGC-------GGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 93915 | 0.67 | 0.626447 |
Target: 5'- aGGGGGAC-CCCggggCUCagCCaGACGCCg -3' miRNA: 3'- -UCCCUUGaGGGa---GAGg-GGgCUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 104795 | 0.67 | 0.59623 |
Target: 5'- uGGGAGCUcacaugcCCCg--CCCCCGGC-CCUc -3' miRNA: 3'- uCCCUUGA-------GGGagaGGGGGCUGcGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 120735 | 0.67 | 0.59623 |
Target: 5'- cGGGAACggCCgguCUCgcuagcggcgccuUCCCCCGGCcaccucGCCCa -3' miRNA: 3'- uCCCUUGa-GG---GAG-------------AGGGGGCUG------CGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 30444 | 0.67 | 0.597202 |
Target: 5'- cGGGccCUCCCgcggCgccgcccCCUCCGGCGCCg -3' miRNA: 3'- uCCCuuGAGGGa---Ga------GGGGGCUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 121567 | 0.67 | 0.597202 |
Target: 5'- cGGGGGGCUgcgagUCCUg-CgCCCCGcCGCCCc -3' miRNA: 3'- -UCCCUUGA-----GGGAgaG-GGGGCuGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 24801 | 0.67 | 0.597202 |
Target: 5'- cGGGGGC-CCUg--CCgCCGGCGCCg -3' miRNA: 3'- uCCCUUGaGGGagaGGgGGCUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 33144 | 0.67 | 0.597202 |
Target: 5'- cGGGGGC-CCCUCgUCCCgggCCGuacgcggccuuCGCCCc -3' miRNA: 3'- uCCCUUGaGGGAG-AGGG---GGCu----------GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 78996 | 0.67 | 0.616686 |
Target: 5'- uGGGAAaaCCCggaCcCCCCCGGCcCCCc -3' miRNA: 3'- uCCCUUgaGGGa--GaGGGGGCUGcGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 126763 | 0.67 | 0.616686 |
Target: 5'- cAGGGcuacgugcucGACagCCaCUUCCCCGACuGCCCc -3' miRNA: 3'- -UCCC----------UUGagGGaGAGGGGGCUG-CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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