miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 22924 0.71 0.373923
Target:  5'- gAGGGAcccGCgggCCCcgCUUCCCCGccGCGCCg -3'
miRNA:   3'- -UCCCU---UGa--GGGa-GAGGGGGC--UGCGGg -5'
5548 5' -61.7 NC_001806.1 + 23526 0.66 0.693527
Target:  5'- gAGGGccccGACcCCCUgggcggcuggcggCggcagCCCCCGGgGCCCa -3'
miRNA:   3'- -UCCC----UUGaGGGA-------------Ga----GGGGGCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 23804 0.68 0.549004
Target:  5'- cGGGGGC-CgCCUCUuuggcCCCCUGcGCGCCUc -3'
miRNA:   3'- uCCCUUGaG-GGAGA-----GGGGGC-UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 24801 0.67 0.597202
Target:  5'- cGGGGGC-CCUg--CCgCCGGCGCCg -3'
miRNA:   3'- uCCCUUGaGGGagaGGgGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 26712 0.71 0.40592
Target:  5'- cGGGGGGCggggcugacCCCUCccacCCCCCcucGCGCCCc -3'
miRNA:   3'- -UCCCUUGa--------GGGAGa---GGGGGc--UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 30117 0.68 0.539498
Target:  5'- ---cGACUCCCccccggccUCUCCCCacaggccccccgCGGCGCCCa -3'
miRNA:   3'- ucccUUGAGGG--------AGAGGGG------------GCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 30263 0.67 0.626447
Target:  5'- cGGGg---CCCgg-CCCCCG-CGCCCc -3'
miRNA:   3'- uCCCuugaGGGagaGGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 30444 0.67 0.597202
Target:  5'- cGGGccCUCCCgcggCgccgcccCCUCCGGCGCCg -3'
miRNA:   3'- uCCCuuGAGGGa---Ga------GGGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 30642 0.7 0.460529
Target:  5'- gGGGGGGCgcggccagggugggCCCgggaCcCCCCUGACGUCCu -3'
miRNA:   3'- -UCCCUUGa-------------GGGa---GaGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 30740 0.67 0.636212
Target:  5'- cGGGGGC-CgCCUCUUCCgCCGccggggccGCGUCCu -3'
miRNA:   3'- uCCCUUGaG-GGAGAGGG-GGC--------UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 30818 0.75 0.240721
Target:  5'- gAGGGAGacaagaggaaacCUCCCUCggCCCCCG-CGCUg -3'
miRNA:   3'- -UCCCUU------------GAGGGAGa-GGGGGCuGCGGg -5'
5548 5' -61.7 NC_001806.1 + 32246 0.67 0.606935
Target:  5'- cAGGuGGGCcgguacuccaUCCCcccCUCCCCCGACccuuCCCa -3'
miRNA:   3'- -UCC-CUUG----------AGGGa--GAGGGGGCUGc---GGG- -5'
5548 5' -61.7 NC_001806.1 + 32967 0.66 0.655726
Target:  5'- -cGGGGC-CCCUUgggUCCgCCGGgGCCCc -3'
miRNA:   3'- ucCCUUGaGGGAG---AGGgGGCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 33144 0.67 0.597202
Target:  5'- cGGGGGC-CCCUCgUCCCgggCCGuacgcggccuuCGCCCc -3'
miRNA:   3'- uCCCUUGaGGGAG-AGGG---GGCu----------GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 38031 0.67 0.626447
Target:  5'- cGGGAccaccGCgacCCCga-CCCCugCGACGCCCa -3'
miRNA:   3'- uCCCU-----UGa--GGGagaGGGG--GCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 45704 0.67 0.597202
Target:  5'- -cGGAccCUCuCUUCUCUCCCGGgcCGCCCc -3'
miRNA:   3'- ucCCUu-GAG-GGAGAGGGGGCU--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 47030 0.67 0.616686
Target:  5'- uGGGggUUUUCUCUUCCC--GCGCCg -3'
miRNA:   3'- uCCCuuGAGGGAGAGGGGgcUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 48266 0.71 0.389707
Target:  5'- gAGGGccuGCUCgaUCUCCCggacgaCGACGCCCc -3'
miRNA:   3'- -UCCCu--UGAGggAGAGGGg-----GCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 49797 0.69 0.511336
Target:  5'- uGGGGGucaugcACUUCgC-CUCCCCCGACaacCCCg -3'
miRNA:   3'- -UCCCU------UGAGG-GaGAGGGGGCUGc--GGG- -5'
5548 5' -61.7 NC_001806.1 + 50127 0.67 0.606935
Target:  5'- gGGGGggUuagugUCCCcccaaUCcggCCCCGACGCCg -3'
miRNA:   3'- -UCCCuuG-----AGGGag---AG---GGGGCUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.