miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 125318 0.67 0.645974
Target:  5'- cGaGGAcAC-CCCUCguggCCCCGACaGCCCc -3'
miRNA:   3'- uC-CCU-UGaGGGAGag--GGGGCUG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 123764 0.69 0.502083
Target:  5'- cGGGcgccccagcGGC-CCCUCUCUCCagGACGCCg -3'
miRNA:   3'- uCCC---------UUGaGGGAGAGGGGg-CUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 121567 0.67 0.597202
Target:  5'- cGGGGGGCUgcgagUCCUg-CgCCCCGcCGCCCc -3'
miRNA:   3'- -UCCCUUGA-----GGGAgaG-GGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 120856 0.69 0.520659
Target:  5'- -uGGGAC-CCCggcggCCCCUGGCGCCg -3'
miRNA:   3'- ucCCUUGaGGGaga--GGGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 120818 0.68 0.549004
Target:  5'- uGGGGuuugCCCUC-CCCCCGcC-CCCg -3'
miRNA:   3'- -UCCCuugaGGGAGaGGGGGCuGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 120735 0.67 0.59623
Target:  5'- cGGGAACggCCgguCUCgcuagcggcgccuUCCCCCGGCcaccucGCCCa -3'
miRNA:   3'- uCCCUUGa-GG---GAG-------------AGGGGGCUG------CGGG- -5'
5548 5' -61.7 NC_001806.1 + 120259 0.7 0.457002
Target:  5'- gAGGGGA---CCg--CCCCCGACGCCUu -3'
miRNA:   3'- -UCCCUUgagGGagaGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 118903 0.72 0.366196
Target:  5'- gGGGGAGCUUCUgg-CCCCCGuCGUgCCg -3'
miRNA:   3'- -UCCCUUGAGGGagaGGGGGCuGCG-GG- -5'
5548 5' -61.7 NC_001806.1 + 116424 0.68 0.549004
Target:  5'- cGGGGAC-CCCaUCagCCUCGuccCGCCCg -3'
miRNA:   3'- uCCCUUGaGGG-AGagGGGGCu--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 113299 0.71 0.414183
Target:  5'- gGGGGGACg----UUCCCCCGGCcgGCCCg -3'
miRNA:   3'- -UCCCUUGagggaGAGGGGGCUG--CGGG- -5'
5548 5' -61.7 NC_001806.1 + 112880 0.7 0.465848
Target:  5'- cGGGGACcuagUCCC-CgCCCCCGGCcaCCCg -3'
miRNA:   3'- uCCCUUG----AGGGaGaGGGGGCUGc-GGG- -5'
5548 5' -61.7 NC_001806.1 + 109045 0.68 0.558562
Target:  5'- gAGGGGGCUcaggCCCaacgCggCCCCGAuaaaCGCCCg -3'
miRNA:   3'- -UCCCUUGA----GGGa---GagGGGGCU----GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 107816 0.66 0.70408
Target:  5'- gGGGGAucggcuacaaGCUCaCCggCgucgaCgUCCGACGCCCa -3'
miRNA:   3'- -UCCCU----------UGAG-GGa-Ga----GgGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 106886 0.74 0.263786
Target:  5'- cAGGGcccGCgcccCCCUCUCUUCUGGCGCCUa -3'
miRNA:   3'- -UCCCu--UGa---GGGAGAGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 106693 0.7 0.42255
Target:  5'- cGGGGGCucuUCCCgggCCCCCgGGCgGCCCc -3'
miRNA:   3'- uCCCUUG---AGGGagaGGGGG-CUG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 106251 0.66 0.70408
Target:  5'- uGGGuAACguuuucggccgUCCCUga-CCCCGAgGCCCu -3'
miRNA:   3'- uCCC-UUG-----------AGGGAgagGGGGCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 104795 0.67 0.59623
Target:  5'- uGGGAGCUcacaugcCCCg--CCCCCGGC-CCUc -3'
miRNA:   3'- uCCCUUGA-------GGGagaGGGGGCUGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 104035 0.75 0.224545
Target:  5'- cAGGGAguggcgcaGCUgCUUCaUCCCCGugGCCCg -3'
miRNA:   3'- -UCCCU--------UGAgGGAGaGGGGGCugCGGG- -5'
5548 5' -61.7 NC_001806.1 + 102960 0.66 0.68485
Target:  5'- cGGGGGCgCC----CCCCCGuCGCCCc -3'
miRNA:   3'- uCCCUUGaGGgagaGGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 101552 0.66 0.674202
Target:  5'- -cGGAGgcucuuguuuuuuCUCCCUaaugccccCUCCCCCcuCGCCCa -3'
miRNA:   3'- ucCCUU-------------GAGGGA--------GAGGGGGcuGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.