miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 151243 0.68 0.568166
Target:  5'- gAGGGGucaGC-CCCgC-CCCCCGG-GCCCa -3'
miRNA:   3'- -UCCCU---UGaGGGaGaGGGGGCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 151118 0.73 0.288614
Target:  5'- cGGGGGGCUCCggCgCCCCCucccCGCCCg -3'
miRNA:   3'- -UCCCUUGAGGgaGaGGGGGcu--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 150109 0.66 0.675172
Target:  5'- cGGGGcGGC-CCCg-UCCccggggaccaaCCCGGCGCCCc -3'
miRNA:   3'- -UCCC-UUGaGGGagAGG-----------GGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 149562 0.69 0.502083
Target:  5'- cAGGGggUUCCg-CaCCCCCuaacauGGCGCCCc -3'
miRNA:   3'- -UCCCuuGAGGgaGaGGGGG------CUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 148815 0.74 0.275977
Target:  5'- gGGGGGGCUCC----CCCCCGAgacCGCCCc -3'
miRNA:   3'- -UCCCUUGAGGgagaGGGGGCU---GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 148242 0.7 0.451737
Target:  5'- cGGGGGGCgcgaucagguuacgCCCcCUCCCCgGccCGCCCu -3'
miRNA:   3'- -UCCCUUGa-------------GGGaGAGGGGgCu-GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 147909 0.7 0.431017
Target:  5'- aAGGGGGC-CCgUCcggCCCCuCGGcCGCCCc -3'
miRNA:   3'- -UCCCUUGaGGgAGa--GGGG-GCU-GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 147298 0.68 0.587492
Target:  5'- cAGGGGGgUCCCgggCcCaCCCUGgccGCGCCCc -3'
miRNA:   3'- -UCCCUUgAGGGa--GaG-GGGGC---UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 147133 0.7 0.439584
Target:  5'- gAGGGAGguuuccucuuguCUCCCUC-CCagggcaCCGACgGCCCc -3'
miRNA:   3'- -UCCCUU------------GAGGGAGaGGg-----GGCUG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 147086 0.73 0.322181
Target:  5'- cGGGcacACUUCCUCggCCCCCG-CgGCCCa -3'
miRNA:   3'- uCCCu--UGAGGGAGa-GGGGGCuG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 146614 0.76 0.184553
Target:  5'- cGGGGGGCgucccuuauuguuuUCCCUCgUCCCgggUCGACGCCCc -3'
miRNA:   3'- -UCCCUUG--------------AGGGAG-AGGG---GGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 141100 1.11 0.000683
Target:  5'- gAGGGAACUCCCUCUCCCCCGACGCCCg -3'
miRNA:   3'- -UCCCUUGAGGGAGAGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 140448 0.71 0.373923
Target:  5'- gGGGGGGCgguuaCUCggCCCCCGAgGCCa -3'
miRNA:   3'- -UCCCUUGagg--GAGa-GGGGGCUgCGGg -5'
5548 5' -61.7 NC_001806.1 + 136927 0.67 0.636212
Target:  5'- gGGGGAGCacagcgcuUCCgUgUCCCCCcGCGCa- -3'
miRNA:   3'- -UCCCUUG--------AGGgAgAGGGGGcUGCGgg -5'
5548 5' -61.7 NC_001806.1 + 134171 0.68 0.568166
Target:  5'- gAGGcGcGCgcaC-CUCCUCCGACGCCCa -3'
miRNA:   3'- -UCC-CuUGaggGaGAGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 133395 0.71 0.39776
Target:  5'- uGGGGGAUUUCCUCUCCgCgG--GCCCg -3'
miRNA:   3'- -UCCCUUGAGGGAGAGGgGgCugCGGG- -5'
5548 5' -61.7 NC_001806.1 + 132705 0.66 0.70408
Target:  5'- uGGGGGCcagggucgUCCUC-CCCCCGcgaGCugGCCCg -3'
miRNA:   3'- uCCCUUGa-------GGGAGaGGGGGC---UG--CGGG- -5'
5548 5' -61.7 NC_001806.1 + 129637 0.73 0.308414
Target:  5'- uGGGGAccgaGCUCCUgcaggCUgCCCUG-CGCCCg -3'
miRNA:   3'- -UCCCU----UGAGGGa----GAgGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 127953 0.66 0.683884
Target:  5'- gAGGGcgacgcgGACUCCCgUCUgagCCCCCGgccacuGCGUCUc -3'
miRNA:   3'- -UCCC-------UUGAGGG-AGA---GGGGGC------UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 126763 0.67 0.616686
Target:  5'- cAGGGcuacgugcucGACagCCaCUUCCCCGACuGCCCc -3'
miRNA:   3'- -UCCC----------UUGagGGaGAGGGGGCUG-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.