miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 50280 0.67 0.626447
Target:  5'- cGGGGcccuGCUCgCCcgCUUcaaUCCCGACGCCg -3'
miRNA:   3'- -UCCCu---UGAG-GGa-GAG---GGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 52655 0.68 0.549004
Target:  5'- --cGAGCcCCCgcccCUCCCCCGAccuCGCCUa -3'
miRNA:   3'- uccCUUGaGGGa---GAGGGGGCU---GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 53233 0.67 0.630353
Target:  5'- gGGGGGAUccgCCCUauuuuccCCCCCGGgccgcaccgggccccCGCCCc -3'
miRNA:   3'- -UCCCUUGa--GGGAga-----GGGGGCU---------------GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 54120 0.66 0.679047
Target:  5'- gGGGGGugUCCCggggcccaggggCCgguaggcguguUCCGAUGCCCg -3'
miRNA:   3'- -UCCCUugAGGGaga---------GG-----------GGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 55251 0.66 0.694489
Target:  5'- gAGGGucGGCgCCCgggCcggCCCCCucCGCCCa -3'
miRNA:   3'- -UCCC--UUGaGGGa--Ga--GGGGGcuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 56687 0.66 0.70408
Target:  5'- gGGGGGACgggggCCCgggaaCCCCGGguCGCUCu -3'
miRNA:   3'- -UCCCUUGa----GGGagag-GGGGCU--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 57866 0.67 0.597202
Target:  5'- uAGGGccGugUCCgcgcgccaucCUCgcCCCCCGAgCGCCCc -3'
miRNA:   3'- -UCCC--UugAGG----------GAGa-GGGGGCU-GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 58999 0.76 0.190374
Target:  5'- cAGGGcGC-CCC-CUCCUCCGGCuGCCCg -3'
miRNA:   3'- -UCCCuUGaGGGaGAGGGGGCUG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 62803 0.66 0.694489
Target:  5'- aGGGGGGCaaagCCCUCg---CUGACGUCCg -3'
miRNA:   3'- -UCCCUUGa---GGGAGagggGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 64808 0.66 0.680983
Target:  5'- aGGGGGACgggguaggccgugCCCgUUCCCagaCGugGCCg -3'
miRNA:   3'- -UCCCUUGa------------GGGaGAGGGg--GCugCGGg -5'
5548 5' -61.7 NC_001806.1 + 65201 0.67 0.613759
Target:  5'- cGGGGccGACUggauccCCCUCcCCCCCGaauaccgcagagcgGCGCCg -3'
miRNA:   3'- -UCCC--UUGA------GGGAGaGGGGGC--------------UGCGGg -5'
5548 5' -61.7 NC_001806.1 + 65443 0.68 0.549004
Target:  5'- aAGGGAGCgggggaugCCgCgg-CCCCCGgguccuggggGCGCCCg -3'
miRNA:   3'- -UCCCUUGa-------GG-GagaGGGGGC----------UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 68465 0.66 0.70408
Target:  5'- uGGuGGcuCUCCC-CgaggCCCCCGACcagGCCUu -3'
miRNA:   3'- -UC-CCuuGAGGGaGa---GGGGGCUG---CGGG- -5'
5548 5' -61.7 NC_001806.1 + 69245 0.82 0.078005
Target:  5'- cGGGGAGCagCC-CUCCgCCGGCGCCCa -3'
miRNA:   3'- -UCCCUUGagGGaGAGGgGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 70495 0.66 0.70408
Target:  5'- cGGGGACacgCCCga-CCgCCUGGgGCCCu -3'
miRNA:   3'- uCCCUUGa--GGGagaGG-GGGCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 71087 0.69 0.511336
Target:  5'- gGGGGGACUacagCCUCggCCCCCuGgGCCa -3'
miRNA:   3'- -UCCCUUGAg---GGAGa-GGGGGcUgCGGg -5'
5548 5' -61.7 NC_001806.1 + 73528 0.68 0.558562
Target:  5'- uGGGGGACUUUCUggCCUCCacGCGCCUg -3'
miRNA:   3'- -UCCCUUGAGGGAgaGGGGGc-UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 74009 0.68 0.568166
Target:  5'- cAGGGGGCUCCgCgcccaCcCCCCCuGgGCCCc -3'
miRNA:   3'- -UCCCUUGAGG-Ga----GaGGGGGcUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 78543 0.73 0.297727
Target:  5'- gGGGGGGCgcgaggcgucacccCCCgCUCCCCCcaACGCCCu -3'
miRNA:   3'- -UCCCUUGa-------------GGGaGAGGGGGc-UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 78923 0.67 0.645974
Target:  5'- --cGAGCggCCC-CUCgCCCGGgGCCCg -3'
miRNA:   3'- uccCUUGa-GGGaGAGgGGGCUgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.