miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 79172 0.66 0.666434
Target:  5'- gGGGGAGCuauUCCCggggcaUCcgguguaccagcgcgCCCCCGACGaCCa -3'
miRNA:   3'- -UCCCUUG---AGGG------AGa--------------GGGGGCUGCgGG- -5'
5548 5' -61.7 NC_001806.1 + 5323 0.66 0.665461
Target:  5'- cAGGGAcgGCcgaUCCCcCUCCCgCGcuuCGUCCg -3'
miRNA:   3'- -UCCCU--UG---AGGGaGAGGGgGCu--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 5770 0.66 0.665461
Target:  5'- cAGGGGGCggggCCCggg-CCCCGACuuCCCg -3'
miRNA:   3'- -UCCCUUGa---GGGagagGGGGCUGc-GGG- -5'
5548 5' -61.7 NC_001806.1 + 32967 0.66 0.655726
Target:  5'- -cGGGGC-CCCUUgggUCCgCCGGgGCCCc -3'
miRNA:   3'- ucCCUUGaGGGAG---AGGgGGCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 20336 0.67 0.649876
Target:  5'- gGGGGGGCggcaaggcgggcggCCCUUgggCCgCCCGcCGUCCc -3'
miRNA:   3'- -UCCCUUGa-------------GGGAGa--GG-GGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 125318 0.67 0.645974
Target:  5'- cGaGGAcAC-CCCUCguggCCCCGACaGCCCc -3'
miRNA:   3'- uC-CCU-UGaGGGAGag--GGGGCUG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 78923 0.67 0.645974
Target:  5'- --cGAGCggCCC-CUCgCCCGGgGCCCg -3'
miRNA:   3'- uccCUUGa-GGGaGAGgGGGCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 82525 0.67 0.645974
Target:  5'- uAGGGcuugCCCagUCCCgCCauGGCGCCCg -3'
miRNA:   3'- -UCCCuugaGGGagAGGG-GG--CUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 6818 0.67 0.636212
Target:  5'- -cGGAGCgUCCCcugcugcgCUCUCCCGGgcugcUGCCCg -3'
miRNA:   3'- ucCCUUG-AGGGa-------GAGGGGGCU-----GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 136927 0.67 0.636212
Target:  5'- gGGGGAGCacagcgcuUCCgUgUCCCCCcGCGCa- -3'
miRNA:   3'- -UCCCUUG--------AGGgAgAGGGGGcUGCGgg -5'
5548 5' -61.7 NC_001806.1 + 30740 0.67 0.636212
Target:  5'- cGGGGGC-CgCCUCUUCCgCCGccggggccGCGUCCu -3'
miRNA:   3'- uCCCUUGaG-GGAGAGGG-GGC--------UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 53233 0.67 0.630353
Target:  5'- gGGGGGAUccgCCCUauuuuccCCCCCGGgccgcaccgggccccCGCCCc -3'
miRNA:   3'- -UCCCUUGa--GGGAga-----GGGGGCU---------------GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 38031 0.67 0.626447
Target:  5'- cGGGAccaccGCgacCCCga-CCCCugCGACGCCCa -3'
miRNA:   3'- uCCCU-----UGa--GGGagaGGGG--GCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 50280 0.67 0.626447
Target:  5'- cGGGGcccuGCUCgCCcgCUUcaaUCCCGACGCCg -3'
miRNA:   3'- -UCCCu---UGAG-GGa-GAG---GGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 30263 0.67 0.626447
Target:  5'- cGGGg---CCCgg-CCCCCG-CGCCCc -3'
miRNA:   3'- uCCCuugaGGGagaGGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 93915 0.67 0.626447
Target:  5'- aGGGGGAC-CCCggggCUCagCCaGACGCCg -3'
miRNA:   3'- -UCCCUUGaGGGa---GAGg-GGgCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 6334 0.67 0.625471
Target:  5'- cAGGGGACgcacCCCgggggCCUCCGACGacagaaaCCCa -3'
miRNA:   3'- -UCCCUUGa---GGGaga--GGGGGCUGC-------GGG- -5'
5548 5' -61.7 NC_001806.1 + 126763 0.67 0.616686
Target:  5'- cAGGGcuacgugcucGACagCCaCUUCCCCGACuGCCCc -3'
miRNA:   3'- -UCCC----------UUGagGGaGAGGGGGCUG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 78996 0.67 0.616686
Target:  5'- uGGGAAaaCCCggaCcCCCCCGGCcCCCc -3'
miRNA:   3'- uCCCUUgaGGGa--GaGGGGGCUGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 47030 0.67 0.616686
Target:  5'- uGGGggUUUUCUCUUCCC--GCGCCg -3'
miRNA:   3'- uCCCuuGAGGGAGAGGGGgcUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.