miRNA display CGI


Results 41 - 60 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 65201 0.67 0.613759
Target:  5'- cGGGGccGACUggauccCCCUCcCCCCCGaauaccgcagagcgGCGCCg -3'
miRNA:   3'- -UCCC--UUGA------GGGAGaGGGGGC--------------UGCGGg -5'
5548 5' -61.7 NC_001806.1 + 19945 0.67 0.606935
Target:  5'- gGGGuGGGCgggUCUUCcCCCCCG-CGUCCg -3'
miRNA:   3'- -UCC-CUUGa--GGGAGaGGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 50127 0.67 0.606935
Target:  5'- gGGGGggUuagugUCCCcccaaUCcggCCCCGACGCCg -3'
miRNA:   3'- -UCCCuuG-----AGGGag---AG---GGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 32246 0.67 0.606935
Target:  5'- cAGGuGGGCcgguacuccaUCCCcccCUCCCCCGACccuuCCCa -3'
miRNA:   3'- -UCC-CUUG----------AGGGa--GAGGGGGCUGc---GGG- -5'
5548 5' -61.7 NC_001806.1 + 57866 0.67 0.597202
Target:  5'- uAGGGccGugUCCgcgcgccaucCUCgcCCCCCGAgCGCCCc -3'
miRNA:   3'- -UCCC--UugAGG----------GAGa-GGGGGCU-GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 30444 0.67 0.597202
Target:  5'- cGGGccCUCCCgcggCgccgcccCCUCCGGCGCCg -3'
miRNA:   3'- uCCCuuGAGGGa---Ga------GGGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 121567 0.67 0.597202
Target:  5'- cGGGGGGCUgcgagUCCUg-CgCCCCGcCGCCCc -3'
miRNA:   3'- -UCCCUUGA-----GGGAgaG-GGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 24801 0.67 0.597202
Target:  5'- cGGGGGC-CCUg--CCgCCGGCGCCg -3'
miRNA:   3'- uCCCUUGaGGGagaGGgGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 33144 0.67 0.597202
Target:  5'- cGGGGGC-CCCUCgUCCCgggCCGuacgcggccuuCGCCCc -3'
miRNA:   3'- uCCCUUGaGGGAG-AGGG---GGCu----------GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 45704 0.67 0.597202
Target:  5'- -cGGAccCUCuCUUCUCUCCCGGgcCGCCCc -3'
miRNA:   3'- ucCCUu-GAG-GGAGAGGGGGCU--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 120735 0.67 0.59623
Target:  5'- cGGGAACggCCgguCUCgcuagcggcgccuUCCCCCGGCcaccucGCCCa -3'
miRNA:   3'- uCCCUUGa-GG---GAG-------------AGGGGGCUG------CGGG- -5'
5548 5' -61.7 NC_001806.1 + 104795 0.67 0.59623
Target:  5'- uGGGAGCUcacaugcCCCg--CCCCCGGC-CCUc -3'
miRNA:   3'- uCCCUUGA-------GGGagaGGGGGCUGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 147298 0.68 0.587492
Target:  5'- cAGGGGGgUCCCgggCcCaCCCUGgccGCGCCCc -3'
miRNA:   3'- -UCCCUUgAGGGa--GaG-GGGGC---UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 14759 0.68 0.587492
Target:  5'- uGGGcuCUCCCcaUCCCCCG-C-CCCa -3'
miRNA:   3'- uCCCuuGAGGGagAGGGGGCuGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 84981 0.68 0.586522
Target:  5'- cGGGGccuuuucGCcgCCCUCgCCCa-GACGCCCu -3'
miRNA:   3'- uCCCU-------UGa-GGGAGaGGGggCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 5017 0.68 0.577812
Target:  5'- cGGGGucgUCCCcgccCUCCUCCGucuccGCGCCCc -3'
miRNA:   3'- -UCCCuugAGGGa---GAGGGGGC-----UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 74009 0.68 0.568166
Target:  5'- cAGGGGGCUCCgCgcccaCcCCCCCuGgGCCCc -3'
miRNA:   3'- -UCCCUUGAGG-Ga----GaGGGGGcUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 151243 0.68 0.568166
Target:  5'- gAGGGGucaGC-CCCgC-CCCCCGG-GCCCa -3'
miRNA:   3'- -UCCCU---UGaGGGaGaGGGGGCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 134171 0.68 0.568166
Target:  5'- gAGGcGcGCgcaC-CUCCUCCGACGCCCa -3'
miRNA:   3'- -UCC-CuUGaggGaGAGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 6097 0.68 0.558562
Target:  5'- cGGGGGGCgggUCUCUCcggcgcacauaaaggCCCggcgcgaCCGACGCCCg -3'
miRNA:   3'- -UCCCUUG---AGGGAGa--------------GGG-------GGCUGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.