miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 120735 0.67 0.59623
Target:  5'- cGGGAACggCCgguCUCgcuagcggcgccuUCCCCCGGCcaccucGCCCa -3'
miRNA:   3'- uCCCUUGa-GG---GAG-------------AGGGGGCUG------CGGG- -5'
5548 5' -61.7 NC_001806.1 + 104795 0.67 0.59623
Target:  5'- uGGGAGCUcacaugcCCCg--CCCCCGGC-CCUc -3'
miRNA:   3'- uCCCUUGA-------GGGagaGGGGGCUGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 45704 0.67 0.597202
Target:  5'- -cGGAccCUCuCUUCUCUCCCGGgcCGCCCc -3'
miRNA:   3'- ucCCUu-GAG-GGAGAGGGGGCU--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 33144 0.67 0.597202
Target:  5'- cGGGGGC-CCCUCgUCCCgggCCGuacgcggccuuCGCCCc -3'
miRNA:   3'- uCCCUUGaGGGAG-AGGG---GGCu----------GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 24801 0.67 0.597202
Target:  5'- cGGGGGC-CCUg--CCgCCGGCGCCg -3'
miRNA:   3'- uCCCUUGaGGGagaGGgGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 121567 0.67 0.597202
Target:  5'- cGGGGGGCUgcgagUCCUg-CgCCCCGcCGCCCc -3'
miRNA:   3'- -UCCCUUGA-----GGGAgaG-GGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 30444 0.67 0.597202
Target:  5'- cGGGccCUCCCgcggCgccgcccCCUCCGGCGCCg -3'
miRNA:   3'- uCCCuuGAGGGa---Ga------GGGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 57866 0.67 0.597202
Target:  5'- uAGGGccGugUCCgcgcgccaucCUCgcCCCCCGAgCGCCCc -3'
miRNA:   3'- -UCCC--UugAGG----------GAGa-GGGGGCU-GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 19945 0.67 0.606935
Target:  5'- gGGGuGGGCgggUCUUCcCCCCCG-CGUCCg -3'
miRNA:   3'- -UCC-CUUGa--GGGAGaGGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 32246 0.67 0.606935
Target:  5'- cAGGuGGGCcgguacuccaUCCCcccCUCCCCCGACccuuCCCa -3'
miRNA:   3'- -UCC-CUUG----------AGGGa--GAGGGGGCUGc---GGG- -5'
5548 5' -61.7 NC_001806.1 + 50127 0.67 0.606935
Target:  5'- gGGGGggUuagugUCCCcccaaUCcggCCCCGACGCCg -3'
miRNA:   3'- -UCCCuuG-----AGGGag---AG---GGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 65201 0.67 0.613759
Target:  5'- cGGGGccGACUggauccCCCUCcCCCCCGaauaccgcagagcgGCGCCg -3'
miRNA:   3'- -UCCC--UUGA------GGGAGaGGGGGC--------------UGCGGg -5'
5548 5' -61.7 NC_001806.1 + 47030 0.67 0.616686
Target:  5'- uGGGggUUUUCUCUUCCC--GCGCCg -3'
miRNA:   3'- uCCCuuGAGGGAGAGGGGgcUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 78996 0.67 0.616686
Target:  5'- uGGGAAaaCCCggaCcCCCCCGGCcCCCc -3'
miRNA:   3'- uCCCUUgaGGGa--GaGGGGGCUGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 126763 0.67 0.616686
Target:  5'- cAGGGcuacgugcucGACagCCaCUUCCCCGACuGCCCc -3'
miRNA:   3'- -UCCC----------UUGagGGaGAGGGGGCUG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 6334 0.67 0.625471
Target:  5'- cAGGGGACgcacCCCgggggCCUCCGACGacagaaaCCCa -3'
miRNA:   3'- -UCCCUUGa---GGGaga--GGGGGCUGC-------GGG- -5'
5548 5' -61.7 NC_001806.1 + 30263 0.67 0.626447
Target:  5'- cGGGg---CCCgg-CCCCCG-CGCCCc -3'
miRNA:   3'- uCCCuugaGGGagaGGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 93915 0.67 0.626447
Target:  5'- aGGGGGAC-CCCggggCUCagCCaGACGCCg -3'
miRNA:   3'- -UCCCUUGaGGGa---GAGg-GGgCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 50280 0.67 0.626447
Target:  5'- cGGGGcccuGCUCgCCcgCUUcaaUCCCGACGCCg -3'
miRNA:   3'- -UCCCu---UGAG-GGa-GAG---GGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 38031 0.67 0.626447
Target:  5'- cGGGAccaccGCgacCCCga-CCCCugCGACGCCCa -3'
miRNA:   3'- uCCCU-----UGa--GGGagaGGGG--GCUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.