miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 78996 0.67 0.616686
Target:  5'- uGGGAAaaCCCggaCcCCCCCGGCcCCCc -3'
miRNA:   3'- uCCCUUgaGGGa--GaGGGGGCUGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 79172 0.66 0.666434
Target:  5'- gGGGGAGCuauUCCCggggcaUCcgguguaccagcgcgCCCCCGACGaCCa -3'
miRNA:   3'- -UCCCUUG---AGGG------AGa--------------GGGGGCUGCgGG- -5'
5548 5' -61.7 NC_001806.1 + 80166 0.7 0.439584
Target:  5'- cAGG----UCCCUCUCCCCCGcCuCCCg -3'
miRNA:   3'- -UCCcuugAGGGAGAGGGGGCuGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 82525 0.67 0.645974
Target:  5'- uAGGGcuugCCCagUCCCgCCauGGCGCCCg -3'
miRNA:   3'- -UCCCuugaGGGagAGGG-GG--CUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 83328 0.66 0.674202
Target:  5'- uGGGGAgggGCUuuuggacaccgggCCCUUUUCCgCGGCGgCCa -3'
miRNA:   3'- -UCCCU---UGA-------------GGGAGAGGGgGCUGCgGG- -5'
5548 5' -61.7 NC_001806.1 + 84981 0.68 0.586522
Target:  5'- cGGGGccuuuucGCcgCCCUCgCCCa-GACGCCCu -3'
miRNA:   3'- uCCCU-------UGa-GGGAGaGGGggCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 87407 0.74 0.282239
Target:  5'- -cGGAcGCUUgggcgCCUCcCCCCCGGCGCCCc -3'
miRNA:   3'- ucCCU-UGAG-----GGAGaGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 93915 0.67 0.626447
Target:  5'- aGGGGGAC-CCCggggCUCagCCaGACGCCg -3'
miRNA:   3'- -UCCCUUGaGGGa---GAGg-GGgCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 96457 0.69 0.520659
Target:  5'- cGGcGGCUCCgagUUCCCCCGgcACGCCUg -3'
miRNA:   3'- uCCcUUGAGGga-GAGGGGGC--UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 96515 0.71 0.373146
Target:  5'- cGGGGGcccugccacuccgGCgccgCCCg--CCCCUGGCGCCCc -3'
miRNA:   3'- -UCCCU-------------UGa---GGGagaGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 97510 0.71 0.381761
Target:  5'- cGGcGGCUCCUuccgauUCUCUUCCGACGCCa -3'
miRNA:   3'- uCCcUUGAGGG------AGAGGGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 97596 0.66 0.68485
Target:  5'- uGGGGGACUgCaUCggcaaggacgCCCgCGACGCCa -3'
miRNA:   3'- -UCCCUUGAgGgAGa---------GGGgGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 101552 0.66 0.674202
Target:  5'- -cGGAGgcucuuguuuuuuCUCCCUaaugccccCUCCCCCcuCGCCCa -3'
miRNA:   3'- ucCCUU-------------GAGGGA--------GAGGGGGcuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 102960 0.66 0.68485
Target:  5'- cGGGGGCgCC----CCCCCGuCGCCCc -3'
miRNA:   3'- uCCCUUGaGGgagaGGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 104035 0.75 0.224545
Target:  5'- cAGGGAguggcgcaGCUgCUUCaUCCCCGugGCCCg -3'
miRNA:   3'- -UCCCU--------UGAgGGAGaGGGGGCugCGGG- -5'
5548 5' -61.7 NC_001806.1 + 104795 0.67 0.59623
Target:  5'- uGGGAGCUcacaugcCCCg--CCCCCGGC-CCUc -3'
miRNA:   3'- uCCCUUGA-------GGGagaGGGGGCUGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 106251 0.66 0.70408
Target:  5'- uGGGuAACguuuucggccgUCCCUga-CCCCGAgGCCCu -3'
miRNA:   3'- uCCC-UUG-----------AGGGAgagGGGGCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 106693 0.7 0.42255
Target:  5'- cGGGGGCucuUCCCgggCCCCCgGGCgGCCCc -3'
miRNA:   3'- uCCCUUG---AGGGagaGGGGG-CUG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 106886 0.74 0.263786
Target:  5'- cAGGGcccGCgcccCCCUCUCUUCUGGCGCCUa -3'
miRNA:   3'- -UCCCu--UGa---GGGAGAGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 107816 0.66 0.70408
Target:  5'- gGGGGAucggcuacaaGCUCaCCggCgucgaCgUCCGACGCCCa -3'
miRNA:   3'- -UCCCU----------UGAG-GGa-Ga----GgGGGCUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.