miRNA display CGI


Results 61 - 80 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5549 3' -62.4 NC_001806.1 + 64770 0.75 0.206128
Target:  5'- aGCGCgccacGGCCUCCgCGUUCuCGGGCg -3'
miRNA:   3'- cCGCGaca--CCGGAGG-GCAAG-GCCCGg -5'
5549 3' -62.4 NC_001806.1 + 64811 0.67 0.598577
Target:  5'- gGGaCGggGUaGGCCgugCCCGUUCCcagacguGGCCg -3'
miRNA:   3'- -CC-GCgaCA-CCGGa--GGGCAAGGc------CCGG- -5'
5549 3' -62.4 NC_001806.1 + 65673 0.73 0.271069
Target:  5'- uGCGCUGgggccgccGGCCUCCUGUcCCccaaccgGGGCCc -3'
miRNA:   3'- cCGCGACa-------CCGGAGGGCAaGG-------CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 66836 0.68 0.50376
Target:  5'- uGGcCGgUGUGcgccGCCUCCUGgggcCCGGGCa -3'
miRNA:   3'- -CC-GCgACAC----CGGAGGGCaa--GGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 68103 0.71 0.360478
Target:  5'- gGGCGUcaUGgcagaccgcGGUCUCCCG-UCCGaGGCCc -3'
miRNA:   3'- -CCGCG--ACa--------CCGGAGGGCaAGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 68799 0.69 0.467611
Target:  5'- cGUGCaagagGGCCUCCgGUUCUuGGCCc -3'
miRNA:   3'- cCGCGaca--CCGGAGGgCAAGGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 72534 0.66 0.673332
Target:  5'- cGGCGUg--GGCC-CCCGggaggggguagggggCCcgGGGCCa -3'
miRNA:   3'- -CCGCGacaCCGGaGGGCaa-------------GG--CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 73057 0.68 0.541069
Target:  5'- gGGcCGCgGUccccGCCU-CCGUUCCGGaGCCu -3'
miRNA:   3'- -CC-GCGaCAc---CGGAgGGCAAGGCC-CGG- -5'
5549 3' -62.4 NC_001806.1 + 73186 0.67 0.598577
Target:  5'- aGGCGCUGaagacucGCCgcucgCCCGagcccCCGGGCg -3'
miRNA:   3'- -CCGCGACac-----CGGa----GGGCaa---GGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 74873 0.68 0.531647
Target:  5'- uGGCGaccCUGcgGGCCUCCCugccggCGGGCUg -3'
miRNA:   3'- -CCGC---GACa-CCGGAGGGcaag--GCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 75984 0.67 0.588903
Target:  5'- aGCGC---GGCCUUCgGggCCGcGGCCg -3'
miRNA:   3'- cCGCGacaCCGGAGGgCaaGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 76555 0.68 0.550546
Target:  5'- cGGgGCUGcgggaggugcUGGCCgcgCgCGagcgCCGGGCCc -3'
miRNA:   3'- -CCgCGAC----------ACCGGa--GgGCaa--GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 78041 0.68 0.526023
Target:  5'- uGGCGCUgGUGGCCagcucCCCGgaacacauuuacaccUUuuGGcGCCu -3'
miRNA:   3'- -CCGCGA-CACCGGa----GGGC---------------AAggCC-CGG- -5'
5549 3' -62.4 NC_001806.1 + 79549 0.68 0.512063
Target:  5'- cGGCGCccGUgGGCC-CCCGcgacgacUUCCGGcGCUu -3'
miRNA:   3'- -CCGCGa-CA-CCGGaGGGC-------AAGGCC-CGG- -5'
5549 3' -62.4 NC_001806.1 + 79845 0.66 0.617987
Target:  5'- uGGUGUcugGUGuGCCccUCCCGc-UCGGGCCc -3'
miRNA:   3'- -CCGCGa--CAC-CGG--AGGGCaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 84901 0.67 0.598577
Target:  5'- uGGUGCgucgGGCCUCCCGgaagagCCu-GCCg -3'
miRNA:   3'- -CCGCGaca-CCGGAGGGCaa----GGccCGG- -5'
5549 3' -62.4 NC_001806.1 + 88782 0.66 0.617987
Target:  5'- cGGCcacccgGUGGCCUUCCGgagUCaGGCCc -3'
miRNA:   3'- -CCGcga---CACCGGAGGGCaa-GGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 90543 0.72 0.331135
Target:  5'- aGGCGCUGUgugagcgccucGGCCUggaCCCGgaCCGcGCCc -3'
miRNA:   3'- -CCGCGACA-----------CCGGA---GGGCaaGGCcCGG- -5'
5549 3' -62.4 NC_001806.1 + 91145 0.66 0.617987
Target:  5'- -cCGC-GUGGCCg-CUGUUCgaGGGCCa -3'
miRNA:   3'- ccGCGaCACCGGagGGCAAGg-CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 93997 0.67 0.560073
Target:  5'- cGGCGCcGcgagaUGGCCgcCCCGgugUCCGaGCCc -3'
miRNA:   3'- -CCGCGaC-----ACCGGa-GGGCa--AGGCcCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.