miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5549 3' -62.4 NC_001806.1 + 34333 0.67 0.575408
Target:  5'- gGGCGCUGgagauaacGGCC-CCCGgggaacgggggaCCGGGgCu -3'
miRNA:   3'- -CCGCGACa-------CCGGaGGGCaa----------GGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 34399 0.8 0.101683
Target:  5'- gGGCgGCgGUGGCCgggCCGggCCGGGCCg -3'
miRNA:   3'- -CCG-CGaCACCGGag-GGCaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 35823 0.66 0.656868
Target:  5'- gGGCGCgugGcGGCCUCCUa----GGGUCa -3'
miRNA:   3'- -CCGCGa--CaCCGGAGGGcaaggCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 37765 0.66 0.666561
Target:  5'- cGGCgGCgg-GcGCCUUUCGcUCCGgGGCCg -3'
miRNA:   3'- -CCG-CGacaC-CGGAGGGCaAGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 37854 0.68 0.531647
Target:  5'- uGGCGCacgccccgUGUccgcuGGCCUCCgGgugggUCGGGCUg -3'
miRNA:   3'- -CCGCG--------ACA-----CCGGAGGgCaa---GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 41620 0.67 0.560073
Target:  5'- cGGgGgUGUGGggcCCUgCUGUUCCGuggcGGCCa -3'
miRNA:   3'- -CCgCgACACC---GGAgGGCAAGGC----CCGG- -5'
5549 3' -62.4 NC_001806.1 + 42379 0.66 0.656868
Target:  5'- aGGuCGUacGUGGCC-CCCGcgCCccccagacgcuGGGCCu -3'
miRNA:   3'- -CC-GCGa-CACCGGaGGGCaaGG-----------CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 42712 0.72 0.303589
Target:  5'- aGCGCgaacGUGGCCUCCgCG-UCCaGGGUg -3'
miRNA:   3'- cCGCGa---CACCGGAGG-GCaAGG-CCCGg -5'
5549 3' -62.4 NC_001806.1 + 42743 0.69 0.491873
Target:  5'- cGGCGaUGUGGUCcgguuguagcggggUCCCGUgcgCCaGGGCg -3'
miRNA:   3'- -CCGCgACACCGG--------------AGGGCAa--GG-CCCGg -5'
5549 3' -62.4 NC_001806.1 + 46071 0.67 0.569645
Target:  5'- cGGaCGC---GGCgUCCCGUUuCCGGGgCg -3'
miRNA:   3'- -CC-GCGacaCCGgAGGGCAA-GGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 47528 0.68 0.541069
Target:  5'- cGGCGaC-GUGGCCUUCCcuacgcUUCC-GGCCa -3'
miRNA:   3'- -CCGC-GaCACCGGAGGGc-----AAGGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 50081 0.68 0.541069
Target:  5'- cGGCGUU---GCgUCCCG-UCgGGGCCg -3'
miRNA:   3'- -CCGCGAcacCGgAGGGCaAGgCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 50942 0.69 0.494605
Target:  5'- aGCGCcccgGGCC-CCCGUgUCCGGGaCg -3'
miRNA:   3'- cCGCGaca-CCGGaGGGCA-AGGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 51752 0.66 0.617987
Target:  5'- uGGCGCcaaagcUGcUGGCgCgcacCCCGUUCaagagcgGGGCCg -3'
miRNA:   3'- -CCGCG------AC-ACCG-Ga---GGGCAAGg------CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 52733 0.71 0.383646
Target:  5'- cGGCGCgg-GGCC-CCCGcUUCCGGauGCg -3'
miRNA:   3'- -CCGCGacaCCGGaGGGC-AAGGCC--CGg -5'
5549 3' -62.4 NC_001806.1 + 57027 0.72 0.331135
Target:  5'- aGGCaCUggGUGGCCgggCCCGgggCCGgGGCCc -3'
miRNA:   3'- -CCGcGA--CACCGGa--GGGCaa-GGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 57326 0.66 0.616043
Target:  5'- cGCGaggUGUGGCCguccgucgucgaCCCGUcCCuGGCCg -3'
miRNA:   3'- cCGCg--ACACCGGa-----------GGGCAaGGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 57833 0.66 0.637435
Target:  5'- gGGUGCgGUGGgCgacCCCGUcuuagguuUCUuuaGGGCCg -3'
miRNA:   3'- -CCGCGaCACCgGa--GGGCA--------AGG---CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 59976 0.67 0.598577
Target:  5'- cGGCGCgGcaccucucUGGCCUcggggaCCCGggggacggCCGGGUCc -3'
miRNA:   3'- -CCGCGaC--------ACCGGA------GGGCaa------GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 62752 0.68 0.522286
Target:  5'- gGGCGCagc-GUCUCgCCGUcCCGGGUCa -3'
miRNA:   3'- -CCGCGacacCGGAG-GGCAaGGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.