miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5549 3' -62.4 NC_001806.1 + 59976 0.67 0.598577
Target:  5'- cGGCGCgGcaccucucUGGCCUcggggaCCCGggggacggCCGGGUCc -3'
miRNA:   3'- -CCGCGaC--------ACCGGA------GGGCaa------GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 64811 0.67 0.598577
Target:  5'- gGGaCGggGUaGGCCgugCCCGUUCCcagacguGGCCg -3'
miRNA:   3'- -CC-GCgaCA-CCGGa--GGGCAAGGc------CCGG- -5'
5549 3' -62.4 NC_001806.1 + 84901 0.67 0.598577
Target:  5'- uGGUGCgucgGGCCUCCCGgaagagCCu-GCCg -3'
miRNA:   3'- -CCGCGaca-CCGGAGGGCaa----GGccCGG- -5'
5549 3' -62.4 NC_001806.1 + 66836 0.68 0.50376
Target:  5'- uGGcCGgUGUGcgccGCCUCCUGgggcCCGGGCa -3'
miRNA:   3'- -CC-GCgACAC----CGGAGGGCaa--GGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 79549 0.68 0.512063
Target:  5'- cGGCGCccGUgGGCC-CCCGcgacgacUUCCGGcGCUu -3'
miRNA:   3'- -CCGCGa-CA-CCGGaGGGC-------AAGGCC-CGG- -5'
5549 3' -62.4 NC_001806.1 + 2921 0.68 0.512989
Target:  5'- gGGuCGCgGgccgccGCCUCCgGgcggCCGGGCCg -3'
miRNA:   3'- -CC-GCGaCac----CGGAGGgCaa--GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 7825 0.68 0.522286
Target:  5'- cGCGCgGcUGGUCcacaCCCaGUggcUCCGGGCCa -3'
miRNA:   3'- cCGCGaC-ACCGGa---GGG-CA---AGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 27831 0.68 0.522286
Target:  5'- gGGCGCcggGuUGGUC-CCCGgggaCgGGGCCg -3'
miRNA:   3'- -CCGCGa--C-ACCGGaGGGCaa--GgCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 62752 0.68 0.522286
Target:  5'- gGGCGCagc-GUCUCgCCGUcCCGGGUCa -3'
miRNA:   3'- -CCGCGacacCGGAG-GGCAaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 20105 0.68 0.522286
Target:  5'- cGGCGCcGUcugcgGGCgUCggUCGcgCCGGGCCu -3'
miRNA:   3'- -CCGCGaCA-----CCGgAG--GGCaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 26902 0.68 0.522286
Target:  5'- cGCGCggGUGcGCUUCUCGccccacgUCCGGGUg -3'
miRNA:   3'- cCGCGa-CAC-CGGAGGGCa------AGGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 78041 0.68 0.526023
Target:  5'- uGGCGCUgGUGGCCagcucCCCGgaacacauuuacaccUUuuGGcGCCu -3'
miRNA:   3'- -CCGCGA-CACCGGa----GGGC---------------AAggCC-CGG- -5'
5549 3' -62.4 NC_001806.1 + 9831 0.68 0.528832
Target:  5'- cGCGCUGUGGgaggggcuguuccaCCaCCgCGUUCCGGuacugcGCCg -3'
miRNA:   3'- cCGCGACACC--------------GGaGG-GCAAGGCC------CGG- -5'
5549 3' -62.4 NC_001806.1 + 32945 0.68 0.531647
Target:  5'- gGGcCGUUGUGGggcCCCGggCCGgGGCCc -3'
miRNA:   3'- -CC-GCGACACCggaGGGCaaGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 37854 0.68 0.531647
Target:  5'- uGGCGCacgccccgUGUccgcuGGCCUCCgGgugggUCGGGCUg -3'
miRNA:   3'- -CCGCG--------ACA-----CCGGAGGgCaa---GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 4288 0.68 0.531647
Target:  5'- cGGgGCUGcccGGCCgugaagcggCCCGUggcgUCGcGGCCg -3'
miRNA:   3'- -CCgCGACa--CCGGa--------GGGCAa---GGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 22176 0.68 0.531647
Target:  5'- gGGCGCcccggcggccgUGUGGgCgCCCGagCUGGGCg -3'
miRNA:   3'- -CCGCG-----------ACACCgGaGGGCaaGGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 74873 0.68 0.531647
Target:  5'- uGGCGaccCUGcgGGCCUCCCugccggCGGGCUg -3'
miRNA:   3'- -CCGC---GACa-CCGGAGGGcaag--GCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 119586 0.68 0.540124
Target:  5'- cGGUGCUGgcgGGUCUggagcccCCCGgcggGGGCCg -3'
miRNA:   3'- -CCGCGACa--CCGGA-------GGGCaaggCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 47528 0.68 0.541069
Target:  5'- cGGCGaC-GUGGCCUUCCcuacgcUUCC-GGCCa -3'
miRNA:   3'- -CCGC-GaCACCGGAGGGc-----AAGGcCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.