miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5549 3' -62.4 NC_001806.1 + 134316 0.66 0.666561
Target:  5'- gGGCggGUUGuUGGCCagCagGUaCCGGGCCa -3'
miRNA:   3'- -CCG--CGAC-ACCGGagGg-CAaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 37765 0.66 0.666561
Target:  5'- cGGCgGCgg-GcGCCUUUCGcUCCGgGGCCg -3'
miRNA:   3'- -CCG-CGacaC-CGGAGGGCaAGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 3969 0.66 0.670432
Target:  5'- cGCGCggGUucuggagccaccccaGGCCUCCgCG-UCCGGGgUg -3'
miRNA:   3'- cCGCGa-CA---------------CCGGAGG-GCaAGGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 72534 0.66 0.673332
Target:  5'- cGGCGUg--GGCC-CCCGggaggggguagggggCCcgGGGCCa -3'
miRNA:   3'- -CCGCGacaCCGGaGGGCaa-------------GG--CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 23717 0.66 0.676229
Target:  5'- cGCGCgGUGcGCCgggCCCGcccccgCCGcccaGGCCg -3'
miRNA:   3'- cCGCGaCAC-CGGa--GGGCaa----GGC----CCGG- -5'
5549 3' -62.4 NC_001806.1 + 108543 0.66 0.676229
Target:  5'- cGCGUgcgGcUGGCCgcgCCCGccgcUCCGcGGUCa -3'
miRNA:   3'- cCGCGa--C-ACCGGa--GGGCa---AGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 116534 0.66 0.676229
Target:  5'- uGGCGCgcgaaaucGUGGCgCggCUCGUggccaggggcaUCCGGGaCCu -3'
miRNA:   3'- -CCGCGa-------CACCG-Ga-GGGCA-----------AGGCCC-GG- -5'
5549 3' -62.4 NC_001806.1 + 1646 0.66 0.644241
Target:  5'- cGGCGUgcgaGUgGGCCUCcuccucgcagaaguCCGgcgcgCCGGGCg -3'
miRNA:   3'- -CCGCGa---CA-CCGGAG--------------GGCaa---GGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 1763 0.67 0.579257
Target:  5'- cGCGCgGggacaugGGCa--CCGgcgugUCCGGGCCg -3'
miRNA:   3'- cCGCGaCa------CCGgagGGCa----AGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 41620 0.67 0.560073
Target:  5'- cGGgGgUGUGGggcCCUgCUGUUCCGuggcGGCCa -3'
miRNA:   3'- -CCgCgACACC---GGAgGGCAAGGC----CCGG- -5'
5549 3' -62.4 NC_001806.1 + 93997 0.67 0.560073
Target:  5'- cGGCGCcGcgagaUGGCCgcCCCGgugUCCGaGCCc -3'
miRNA:   3'- -CCGCGaC-----ACCGGa-GGGCa--AGGCcCGG- -5'
5549 3' -62.4 NC_001806.1 + 30426 0.67 0.565811
Target:  5'- gGGCGUggaggGUGGgcacgggcCCUCCCGcggcgccgcccccUCCGGcGCCg -3'
miRNA:   3'- -CCGCGa----CACC--------GGAGGGCa------------AGGCC-CGG- -5'
5549 3' -62.4 NC_001806.1 + 131949 0.67 0.568686
Target:  5'- gGGCGCUGUacgcgugcguccuGGCggCCCuGgagcgccagaCCGGGCCg -3'
miRNA:   3'- -CCGCGACA-------------CCGgaGGG-Caa--------GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 1697 0.67 0.569645
Target:  5'- uGGCGUcgGUGGUC-CCCGaggCCGccgcccGGCCg -3'
miRNA:   3'- -CCGCGa-CACCGGaGGGCaa-GGC------CCGG- -5'
5549 3' -62.4 NC_001806.1 + 137972 0.67 0.569645
Target:  5'- uGCGCgaGUacgcccGCCUCUCGUauagCUGGGCCa -3'
miRNA:   3'- cCGCGa-CAc-----CGGAGGGCAa---GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 46071 0.67 0.569645
Target:  5'- cGGaCGC---GGCgUCCCGUUuCCGGGgCg -3'
miRNA:   3'- -CC-GCGacaCCGgAGGGCAA-GGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 84901 0.67 0.598577
Target:  5'- uGGUGCgucgGGCCUCCCGgaagagCCu-GCCg -3'
miRNA:   3'- -CCGCGaca-CCGGAGGGCaa----GGccCGG- -5'
5549 3' -62.4 NC_001806.1 + 64811 0.67 0.598577
Target:  5'- gGGaCGggGUaGGCCgugCCCGUUCCcagacguGGCCg -3'
miRNA:   3'- -CC-GCgaCA-CCGGa--GGGCAAGGc------CCGG- -5'
5549 3' -62.4 NC_001806.1 + 1443 0.67 0.579257
Target:  5'- cGGCGCcgGcGGCagggCCC---CCGGGCCg -3'
miRNA:   3'- -CCGCGa-CaCCGga--GGGcaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 34333 0.67 0.575408
Target:  5'- gGGCGCUGgagauaacGGCC-CCCGgggaacgggggaCCGGGgCu -3'
miRNA:   3'- -CCGCGACa-------CCGGaGGGCaa----------GGCCCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.