Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5549 | 3' | -62.4 | NC_001806.1 | + | 51752 | 0.66 | 0.617987 |
Target: 5'- uGGCGCcaaagcUGcUGGCgCgcacCCCGUUCaagagcgGGGCCg -3' miRNA: 3'- -CCGCG------AC-ACCG-Ga---GGGCAAGg------CCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 119903 | 0.66 | 0.647157 |
Target: 5'- cGGCGC--UGGCCacggCCCugaCCGaGGCCu -3' miRNA: 3'- -CCGCGacACCGGa---GGGcaaGGC-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 23717 | 0.66 | 0.676229 |
Target: 5'- cGCGCgGUGcGCCgggCCCGcccccgCCGcccaGGCCg -3' miRNA: 3'- cCGCGaCAC-CGGa--GGGCaa----GGC----CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 3351 | 0.66 | 0.637435 |
Target: 5'- gGGgGCUGgcgGGCCgggcCCCGgccagccCCGGGaCg -3' miRNA: 3'- -CCgCGACa--CCGGa---GGGCaa-----GGCCCgG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 37765 | 0.66 | 0.666561 |
Target: 5'- cGGCgGCgg-GcGCCUUUCGcUCCGgGGCCg -3' miRNA: 3'- -CCG-CGacaC-CGGAGGGCaAGGC-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 23893 | 0.66 | 0.627709 |
Target: 5'- uGCGCgugGUGGUgcuguaCUCgCCGcugCCGGGCg -3' miRNA: 3'- cCGCGa--CACCG------GAG-GGCaa-GGCCCGg -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 91145 | 0.66 | 0.617987 |
Target: 5'- -cCGC-GUGGCCg-CUGUUCgaGGGCCa -3' miRNA: 3'- ccGCGaCACCGGagGGCAAGg-CCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 32982 | 0.66 | 0.647157 |
Target: 5'- -cCGCcG-GGgC-CCCGggCCGGGCCg -3' miRNA: 3'- ccGCGaCaCCgGaGGGCaaGGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 137972 | 0.67 | 0.569645 |
Target: 5'- uGCGCgaGUacgcccGCCUCUCGUauagCUGGGCCa -3' miRNA: 3'- cCGCGa-CAc-----CGGAGGGCAa---GGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 1443 | 0.67 | 0.579257 |
Target: 5'- cGGCGCcgGcGGCagggCCC---CCGGGCCg -3' miRNA: 3'- -CCGCGa-CaCCGga--GGGcaaGGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 75984 | 0.67 | 0.588903 |
Target: 5'- aGCGC---GGCCUUCgGggCCGcGGCCg -3' miRNA: 3'- cCGCGacaCCGGAGGgCaaGGC-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 46071 | 0.67 | 0.569645 |
Target: 5'- cGGaCGC---GGCgUCCCGUUuCCGGGgCg -3' miRNA: 3'- -CC-GCGacaCCGgAGGGCAA-GGCCCgG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 1697 | 0.67 | 0.569645 |
Target: 5'- uGGCGUcgGUGGUC-CCCGaggCCGccgcccGGCCg -3' miRNA: 3'- -CCGCGa-CACCGGaGGGCaa-GGC------CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 84901 | 0.67 | 0.598577 |
Target: 5'- uGGUGCgucgGGCCUCCCGgaagagCCu-GCCg -3' miRNA: 3'- -CCGCGaca-CCGGAGGGCaa----GGccCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 64811 | 0.67 | 0.598577 |
Target: 5'- gGGaCGggGUaGGCCgugCCCGUUCCcagacguGGCCg -3' miRNA: 3'- -CC-GCgaCA-CCGGa--GGGCAAGGc------CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 59976 | 0.67 | 0.598577 |
Target: 5'- cGGCGCgGcaccucucUGGCCUcggggaCCCGggggacggCCGGGUCc -3' miRNA: 3'- -CCGCGaC--------ACCGGA------GGGCaa------GGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 73186 | 0.67 | 0.598577 |
Target: 5'- aGGCGCUGaagacucGCCgcucgCCCGagcccCCGGGCg -3' miRNA: 3'- -CCGCGACac-----CGGa----GGGCaa---GGCCCGg -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 30426 | 0.67 | 0.565811 |
Target: 5'- gGGCGUggaggGUGGgcacgggcCCUCCCGcggcgccgcccccUCCGGcGCCg -3' miRNA: 3'- -CCGCGa----CACC--------GGAGGGCa------------AGGCC-CGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 93997 | 0.67 | 0.560073 |
Target: 5'- cGGCGCcGcgagaUGGCCgcCCCGgugUCCGaGCCc -3' miRNA: 3'- -CCGCGaC-----ACCGGa-GGGCa--AGGCcCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 41620 | 0.67 | 0.560073 |
Target: 5'- cGGgGgUGUGGggcCCUgCUGUUCCGuggcGGCCa -3' miRNA: 3'- -CCgCgACACC---GGAgGGCAAGGC----CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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