miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5549 3' -62.4 NC_001806.1 + 22062 0.7 0.407781
Target:  5'- cGGCGCcG-GGCC-CCCGcccCCGGGgCg -3'
miRNA:   3'- -CCGCGaCaCCGGaGGGCaa-GGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 102485 0.7 0.407781
Target:  5'- cGGUaCUGUGGCCggccgcccucggUCCCGaucaCCGcGGCCa -3'
miRNA:   3'- -CCGcGACACCGG------------AGGGCaa--GGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 1867 0.7 0.402878
Target:  5'- aGGCGCgcgugcGcGGCCUCCaCGcgcgcgaagacccCCGGGCCg -3'
miRNA:   3'- -CCGCGa-----CaCCGGAGG-GCaa-----------GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 22313 0.7 0.391585
Target:  5'- uGGCGCUGgaccaGGCCUgcuUCCGgaUCuCGGGCg -3'
miRNA:   3'- -CCGCGACa----CCGGA---GGGCa-AG-GCCCGg -5'
5549 3' -62.4 NC_001806.1 + 23479 0.69 0.485526
Target:  5'- cGGCGCa--GGCCcgCCCGcgccCCGuGGCCg -3'
miRNA:   3'- -CCGCGacaCCGGa-GGGCaa--GGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 129521 0.69 0.485526
Target:  5'- cGCGCaguugGUGGaCUUCCUGUgcggucUCCGGGgCg -3'
miRNA:   3'- cCGCGa----CACC-GGAGGGCA------AGGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 151304 0.69 0.485526
Target:  5'- cGGCGgUGggccgGGCCUCuggcgCCGgcUCGGGCg -3'
miRNA:   3'- -CCGCgACa----CCGGAG-----GGCaaGGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 22088 0.69 0.490963
Target:  5'- gGGUGCUGUacGGCggCCUGggcgacagccgcCCGGGCCu -3'
miRNA:   3'- -CCGCGACA--CCGgaGGGCaa----------GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 42743 0.69 0.491873
Target:  5'- cGGCGaUGUGGUCcgguuguagcggggUCCCGUgcgCCaGGGCg -3'
miRNA:   3'- -CCGCgACACCGG--------------AGGGCAa--GG-CCCGg -5'
5549 3' -62.4 NC_001806.1 + 50942 0.69 0.494605
Target:  5'- aGCGCcccgGGCC-CCCGUgUCCGGGaCg -3'
miRNA:   3'- cCGCGaca-CCGGaGGGCA-AGGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 98696 0.69 0.485526
Target:  5'- gGGCGCUGgccgugGGUCUgUUGgUCCuGGCCg -3'
miRNA:   3'- -CCGCGACa-----CCGGAgGGCaAGGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 33138 0.69 0.485526
Target:  5'- cGCGgUcGggGGCCcCUCGUcCCGGGCCg -3'
miRNA:   3'- cCGCgA-Ca-CCGGaGGGCAaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 22863 0.69 0.485526
Target:  5'- cGGCGacCUGgcGGCCgUCCCGgggcuggCCGgGGCCc -3'
miRNA:   3'- -CCGC--GACa-CCGG-AGGGCaa-----GGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 22385 0.69 0.485526
Target:  5'- uGGCGCg--GGCCgugCCCcacCUGGGCUa -3'
miRNA:   3'- -CCGCGacaCCGGa--GGGcaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 130629 0.69 0.476526
Target:  5'- uGGCGUUGcuggaGGCCugucUCCgCGUUCCcauGGCCa -3'
miRNA:   3'- -CCGCGACa----CCGG----AGG-GCAAGGc--CCGG- -5'
5549 3' -62.4 NC_001806.1 + 120107 0.69 0.476526
Target:  5'- gGGCcCUG-GGCCaggCCa--UCCGGGCCg -3'
miRNA:   3'- -CCGcGACaCCGGa--GGgcaAGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 21923 0.69 0.476526
Target:  5'- cGCGCggcgGUGGCCggCCGcgacgccaCGGGCCc -3'
miRNA:   3'- cCGCGa---CACCGGagGGCaag-----GCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 68799 0.69 0.467611
Target:  5'- cGUGCaagagGGCCUCCgGUUCUuGGCCc -3'
miRNA:   3'- cCGCGaca--CCGGAGGgCAAGGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 24687 0.69 0.467611
Target:  5'- uGCGCgccGGCCcggCCCGguggCgCGGGCCg -3'
miRNA:   3'- cCGCGacaCCGGa--GGGCaa--G-GCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 79549 0.68 0.512063
Target:  5'- cGGCGCccGUgGGCC-CCCGcgacgacUUCCGGcGCUu -3'
miRNA:   3'- -CCGCGa-CA-CCGGaGGGC-------AAGGCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.