miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5549 3' -62.4 NC_001806.1 + 22062 0.7 0.407781
Target:  5'- cGGCGCcG-GGCC-CCCGcccCCGGGgCg -3'
miRNA:   3'- -CCGCGaCaCCGGaGGGCaa-GGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 102485 0.7 0.407781
Target:  5'- cGGUaCUGUGGCCggccgcccucggUCCCGaucaCCGcGGCCa -3'
miRNA:   3'- -CCGcGACACCGG------------AGGGCaa--GGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 131497 0.72 0.303589
Target:  5'- aGGgGCcaaguUGGCC-CCCGgacCCGGGCCg -3'
miRNA:   3'- -CCgCGac---ACCGGaGGGCaa-GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 42712 0.72 0.303589
Target:  5'- aGCGCgaacGUGGCCUCCgCG-UCCaGGGUg -3'
miRNA:   3'- cCGCGa---CACCGGAGG-GCaAGG-CCCGg -5'
5549 3' -62.4 NC_001806.1 + 65673 0.73 0.271069
Target:  5'- uGCGCUGgggccgccGGCCUCCUGUcCCccaaccgGGGCCc -3'
miRNA:   3'- cCGCGACa-------CCGGAGGGCAaGG-------CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 127040 0.73 0.26563
Target:  5'- aGCuaUG-GGCCUCUCGUUCUccgGGGCCc -3'
miRNA:   3'- cCGcgACaCCGGAGGGCAAGG---CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 94172 0.74 0.25386
Target:  5'- gGGCGCUGcGGCgUCguCUGaggCCGGGCCu -3'
miRNA:   3'- -CCGCGACaCCGgAG--GGCaa-GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 64770 0.75 0.206128
Target:  5'- aGCGCgccacGGCCUCCgCGUUCuCGGGCg -3'
miRNA:   3'- cCGCGaca--CCGGAGG-GCAAG-GCCCGg -5'
5549 3' -62.4 NC_001806.1 + 4715 0.79 0.109327
Target:  5'- cGCGUaGcggGGCCUCCCGUUcgcggccCCGGGCCg -3'
miRNA:   3'- cCGCGaCa--CCGGAGGGCAA-------GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 34399 0.8 0.101683
Target:  5'- gGGCgGCgGUGGCCgggCCGggCCGGGCCg -3'
miRNA:   3'- -CCG-CGaCACCGGag-GGCaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 131357 0.72 0.310307
Target:  5'- cGGCGCUGUcGGagCUCCCca-CCGaGGCCu -3'
miRNA:   3'- -CCGCGACA-CCg-GAGGGcaaGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 57027 0.72 0.331135
Target:  5'- aGGCaCUggGUGGCCgggCCCGgggCCGgGGCCc -3'
miRNA:   3'- -CCGcGA--CACCGGa--GGGCaa-GGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 1867 0.7 0.402878
Target:  5'- aGGCGCgcgugcGcGGCCUCCaCGcgcgcgaagacccCCGGGCCg -3'
miRNA:   3'- -CCGCGa-----CaCCGGAGG-GCaa-----------GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 22313 0.7 0.391585
Target:  5'- uGGCGCUGgaccaGGCCUgcuUCCGgaUCuCGGGCg -3'
miRNA:   3'- -CCGCGACa----CCGGA---GGGCa-AG-GCCCGg -5'
5549 3' -62.4 NC_001806.1 + 136372 0.71 0.383646
Target:  5'- cGGCGCgcuccGcGGCCUCCgCGa-CCGuGGCCa -3'
miRNA:   3'- -CCGCGa----CaCCGGAGG-GCaaGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 52733 0.71 0.383646
Target:  5'- cGGCGCgg-GGCC-CCCGcUUCCGGauGCg -3'
miRNA:   3'- -CCGCGacaCCGGaGGGC-AAGGCC--CGg -5'
5549 3' -62.4 NC_001806.1 + 4940 0.71 0.368091
Target:  5'- cGGCGUcgGUgcccgccgcgggGGcCCUCCCGUcccgCCGGGCg -3'
miRNA:   3'- -CCGCGa-CA------------CC-GGAGGGCAa---GGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 68103 0.71 0.360478
Target:  5'- gGGCGUcaUGgcagaccgcGGUCUCCCG-UCCGaGGCCc -3'
miRNA:   3'- -CCGCG--ACa--------CCGGAGGGCaAGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 27056 0.71 0.345583
Target:  5'- cGUGcCUGgGGCCcgaggCCCGUgcCCGGGCCc -3'
miRNA:   3'- cCGC-GACaCCGGa----GGGCAa-GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 90543 0.72 0.331135
Target:  5'- aGGCGCUGUgugagcgccucGGCCUggaCCCGgaCCGcGCCc -3'
miRNA:   3'- -CCGCGACA-----------CCGGA---GGGCaaGGCcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.