Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5549 | 3' | -62.4 | NC_001806.1 | + | 75984 | 0.67 | 0.588903 |
Target: 5'- aGCGC---GGCCUUCgGggCCGcGGCCg -3' miRNA: 3'- cCGCGacaCCGGAGGgCaaGGC-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 73186 | 0.67 | 0.598577 |
Target: 5'- aGGCGCUGaagacucGCCgcucgCCCGagcccCCGGGCg -3' miRNA: 3'- -CCGCGACac-----CGGa----GGGCaa---GGCCCGg -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 59976 | 0.67 | 0.598577 |
Target: 5'- cGGCGCgGcaccucucUGGCCUcggggaCCCGggggacggCCGGGUCc -3' miRNA: 3'- -CCGCGaC--------ACCGGA------GGGCaa------GGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 64811 | 0.67 | 0.598577 |
Target: 5'- gGGaCGggGUaGGCCgugCCCGUUCCcagacguGGCCg -3' miRNA: 3'- -CC-GCgaCA-CCGGa--GGGCAAGGc------CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 84901 | 0.67 | 0.598577 |
Target: 5'- uGGUGCgucgGGCCUCCCGgaagagCCu-GCCg -3' miRNA: 3'- -CCGCGaca-CCGGAGGGCaa----GGccCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 57326 | 0.66 | 0.616043 |
Target: 5'- cGCGaggUGUGGCCguccgucgucgaCCCGUcCCuGGCCg -3' miRNA: 3'- cCGCg--ACACCGGa-----------GGGCAaGGcCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 5599 | 0.66 | 0.617987 |
Target: 5'- gGGgGCccGUGGCCgcggCCCGUUggucgaaccCCcGGCCc -3' miRNA: 3'- -CCgCGa-CACCGGa---GGGCAA---------GGcCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 3969 | 0.66 | 0.670432 |
Target: 5'- cGCGCggGUucuggagccaccccaGGCCUCCgCG-UCCGGGgUg -3' miRNA: 3'- cCGCGa-CA---------------CCGGAGG-GCaAGGCCCgG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 119903 | 0.66 | 0.647157 |
Target: 5'- cGGCGC--UGGCCacggCCCugaCCGaGGCCu -3' miRNA: 3'- -CCGCGacACCGGa---GGGcaaGGC-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 42379 | 0.66 | 0.656868 |
Target: 5'- aGGuCGUacGUGGCC-CCCGcgCCccccagacgcuGGGCCu -3' miRNA: 3'- -CC-GCGa-CACCGGaGGGCaaGG-----------CCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 11259 | 0.66 | 0.656868 |
Target: 5'- cGGUuaUGUGGUgCUCCCGg-CCaGuGGCCg -3' miRNA: 3'- -CCGcgACACCG-GAGGGCaaGG-C-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 35823 | 0.66 | 0.656868 |
Target: 5'- gGGCGCgugGcGGCCUCCUa----GGGUCa -3' miRNA: 3'- -CCGCGa--CaCCGGAGGGcaaggCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 134316 | 0.66 | 0.666561 |
Target: 5'- gGGCggGUUGuUGGCCagCagGUaCCGGGCCa -3' miRNA: 3'- -CCG--CGAC-ACCGGagGg-CAaGGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 37765 | 0.66 | 0.666561 |
Target: 5'- cGGCgGCgg-GcGCCUUUCGcUCCGgGGCCg -3' miRNA: 3'- -CCG-CGacaC-CGGAGGGCaAGGC-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 108543 | 0.66 | 0.676229 |
Target: 5'- cGCGUgcgGcUGGCCgcgCCCGccgcUCCGcGGUCa -3' miRNA: 3'- cCGCGa--C-ACCGGa--GGGCa---AGGC-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 24003 | 0.66 | 0.676229 |
Target: 5'- uGGCgGCccUGGCCaaCCGgcugUgCGGGCCg -3' miRNA: 3'- -CCG-CGacACCGGagGGCa---AgGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 116534 | 0.66 | 0.676229 |
Target: 5'- uGGCGCgcgaaaucGUGGCgCggCUCGUggccaggggcaUCCGGGaCCu -3' miRNA: 3'- -CCGCGa-------CACCG-Ga-GGGCA-----------AGGCCC-GG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 32982 | 0.66 | 0.647157 |
Target: 5'- -cCGCcG-GGgC-CCCGggCCGGGCCg -3' miRNA: 3'- ccGCGaCaCCgGaGGGCaaGGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 23717 | 0.66 | 0.676229 |
Target: 5'- cGCGCgGUGcGCCgggCCCGcccccgCCGcccaGGCCg -3' miRNA: 3'- cCGCGaCAC-CGGa--GGGCaa----GGC----CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 72534 | 0.66 | 0.673332 |
Target: 5'- cGGCGUg--GGCC-CCCGggaggggguagggggCCcgGGGCCa -3' miRNA: 3'- -CCGCGacaCCGGaGGGCaa-------------GG--CCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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