miRNA display CGI


Results 21 - 40 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5549 3' -62.4 NC_001806.1 + 75984 0.67 0.588903
Target:  5'- aGCGC---GGCCUUCgGggCCGcGGCCg -3'
miRNA:   3'- cCGCGacaCCGGAGGgCaaGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 73186 0.67 0.598577
Target:  5'- aGGCGCUGaagacucGCCgcucgCCCGagcccCCGGGCg -3'
miRNA:   3'- -CCGCGACac-----CGGa----GGGCaa---GGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 59976 0.67 0.598577
Target:  5'- cGGCGCgGcaccucucUGGCCUcggggaCCCGggggacggCCGGGUCc -3'
miRNA:   3'- -CCGCGaC--------ACCGGA------GGGCaa------GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 64811 0.67 0.598577
Target:  5'- gGGaCGggGUaGGCCgugCCCGUUCCcagacguGGCCg -3'
miRNA:   3'- -CC-GCgaCA-CCGGa--GGGCAAGGc------CCGG- -5'
5549 3' -62.4 NC_001806.1 + 84901 0.67 0.598577
Target:  5'- uGGUGCgucgGGCCUCCCGgaagagCCu-GCCg -3'
miRNA:   3'- -CCGCGaca-CCGGAGGGCaa----GGccCGG- -5'
5549 3' -62.4 NC_001806.1 + 57326 0.66 0.616043
Target:  5'- cGCGaggUGUGGCCguccgucgucgaCCCGUcCCuGGCCg -3'
miRNA:   3'- cCGCg--ACACCGGa-----------GGGCAaGGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 5599 0.66 0.617987
Target:  5'- gGGgGCccGUGGCCgcggCCCGUUggucgaaccCCcGGCCc -3'
miRNA:   3'- -CCgCGa-CACCGGa---GGGCAA---------GGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 3969 0.66 0.670432
Target:  5'- cGCGCggGUucuggagccaccccaGGCCUCCgCG-UCCGGGgUg -3'
miRNA:   3'- cCGCGa-CA---------------CCGGAGG-GCaAGGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 119903 0.66 0.647157
Target:  5'- cGGCGC--UGGCCacggCCCugaCCGaGGCCu -3'
miRNA:   3'- -CCGCGacACCGGa---GGGcaaGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 42379 0.66 0.656868
Target:  5'- aGGuCGUacGUGGCC-CCCGcgCCccccagacgcuGGGCCu -3'
miRNA:   3'- -CC-GCGa-CACCGGaGGGCaaGG-----------CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 11259 0.66 0.656868
Target:  5'- cGGUuaUGUGGUgCUCCCGg-CCaGuGGCCg -3'
miRNA:   3'- -CCGcgACACCG-GAGGGCaaGG-C-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 35823 0.66 0.656868
Target:  5'- gGGCGCgugGcGGCCUCCUa----GGGUCa -3'
miRNA:   3'- -CCGCGa--CaCCGGAGGGcaaggCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 134316 0.66 0.666561
Target:  5'- gGGCggGUUGuUGGCCagCagGUaCCGGGCCa -3'
miRNA:   3'- -CCG--CGAC-ACCGGagGg-CAaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 37765 0.66 0.666561
Target:  5'- cGGCgGCgg-GcGCCUUUCGcUCCGgGGCCg -3'
miRNA:   3'- -CCG-CGacaC-CGGAGGGCaAGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 108543 0.66 0.676229
Target:  5'- cGCGUgcgGcUGGCCgcgCCCGccgcUCCGcGGUCa -3'
miRNA:   3'- cCGCGa--C-ACCGGa--GGGCa---AGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 24003 0.66 0.676229
Target:  5'- uGGCgGCccUGGCCaaCCGgcugUgCGGGCCg -3'
miRNA:   3'- -CCG-CGacACCGGagGGCa---AgGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 116534 0.66 0.676229
Target:  5'- uGGCGCgcgaaaucGUGGCgCggCUCGUggccaggggcaUCCGGGaCCu -3'
miRNA:   3'- -CCGCGa-------CACCG-Ga-GGGCA-----------AGGCCC-GG- -5'
5549 3' -62.4 NC_001806.1 + 32982 0.66 0.647157
Target:  5'- -cCGCcG-GGgC-CCCGggCCGGGCCg -3'
miRNA:   3'- ccGCGaCaCCgGaGGGCaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 23717 0.66 0.676229
Target:  5'- cGCGCgGUGcGCCgggCCCGcccccgCCGcccaGGCCg -3'
miRNA:   3'- cCGCGaCAC-CGGa--GGGCaa----GGC----CCGG- -5'
5549 3' -62.4 NC_001806.1 + 72534 0.66 0.673332
Target:  5'- cGGCGUg--GGCC-CCCGggaggggguagggggCCcgGGGCCa -3'
miRNA:   3'- -CCGCGacaCCGGaGGGCaa-------------GG--CCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.