miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5549 3' -62.4 NC_001806.1 + 22088 0.69 0.490963
Target:  5'- gGGUGCUGUacGGCggCCUGggcgacagccgcCCGGGCCu -3'
miRNA:   3'- -CCGCGACA--CCGgaGGGCaa----------GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 22176 0.68 0.531647
Target:  5'- gGGCGCcccggcggccgUGUGGgCgCCCGagCUGGGCg -3'
miRNA:   3'- -CCGCG-----------ACACCgGaGGGCaaGGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 22313 0.7 0.391585
Target:  5'- uGGCGCUGgaccaGGCCUgcuUCCGgaUCuCGGGCg -3'
miRNA:   3'- -CCGCGACa----CCGGA---GGGCa-AG-GCCCGg -5'
5549 3' -62.4 NC_001806.1 + 22385 0.69 0.485526
Target:  5'- uGGCGCg--GGCCgugCCCcacCUGGGCUa -3'
miRNA:   3'- -CCGCGacaCCGGa--GGGcaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 22559 0.7 0.432844
Target:  5'- cGGCGCUGacgggGGCCgcggggagcCCCGgcgCCGGcGCa -3'
miRNA:   3'- -CCGCGACa----CCGGa--------GGGCaa-GGCC-CGg -5'
5549 3' -62.4 NC_001806.1 + 22863 0.69 0.485526
Target:  5'- cGGCGacCUGgcGGCCgUCCCGgggcuggCCGgGGCCc -3'
miRNA:   3'- -CCGC--GACa-CCGG-AGGGCaa-----GGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 23479 0.69 0.485526
Target:  5'- cGGCGCa--GGCCcgCCCGcgccCCGuGGCCg -3'
miRNA:   3'- -CCGCGacaCCGGa-GGGCaa--GGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 23717 0.66 0.676229
Target:  5'- cGCGCgGUGcGCCgggCCCGcccccgCCGcccaGGCCg -3'
miRNA:   3'- cCGCGaCAC-CGGa--GGGCaa----GGC----CCGG- -5'
5549 3' -62.4 NC_001806.1 + 23893 0.66 0.627709
Target:  5'- uGCGCgugGUGGUgcuguaCUCgCCGcugCCGGGCg -3'
miRNA:   3'- cCGCGa--CACCG------GAG-GGCaa-GGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 24003 0.66 0.676229
Target:  5'- uGGCgGCccUGGCCaaCCGgcugUgCGGGCCg -3'
miRNA:   3'- -CCG-CGacACCGGagGGCa---AgGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 24687 0.69 0.467611
Target:  5'- uGCGCgccGGCCcggCCCGguggCgCGGGCCg -3'
miRNA:   3'- cCGCGacaCCGGa--GGGCaa--G-GCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 26902 0.68 0.522286
Target:  5'- cGCGCggGUGcGCUUCUCGccccacgUCCGGGUg -3'
miRNA:   3'- cCGCGa-CAC-CGGAGGGCa------AGGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 27056 0.71 0.345583
Target:  5'- cGUGcCUGgGGCCcgaggCCCGUgcCCGGGCCc -3'
miRNA:   3'- cCGC-GACaCCGGa----GGGCAa-GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 27776 0.66 0.626737
Target:  5'- cGgGUUG-GGCC-CCCaaaucggGggCCGGGCCg -3'
miRNA:   3'- cCgCGACaCCGGaGGG-------CaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 27831 0.68 0.522286
Target:  5'- gGGCGCcggGuUGGUC-CCCGgggaCgGGGCCg -3'
miRNA:   3'- -CCGCGa--C-ACCGGaGGGCaa--GgCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 30177 0.66 0.637435
Target:  5'- -cCGCcccgGGCCcCCCGcgUCCGcGGCCg -3'
miRNA:   3'- ccGCGaca-CCGGaGGGCa-AGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 30426 0.67 0.565811
Target:  5'- gGGCGUggaggGUGGgcacgggcCCUCCCGcggcgccgcccccUCCGGcGCCg -3'
miRNA:   3'- -CCGCGa----CACC--------GGAGGGCa------------AGGCC-CGG- -5'
5549 3' -62.4 NC_001806.1 + 32945 0.68 0.531647
Target:  5'- gGGcCGUUGUGGggcCCCGggCCGgGGCCc -3'
miRNA:   3'- -CC-GCGACACCggaGGGCaaGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 32982 0.66 0.647157
Target:  5'- -cCGCcG-GGgC-CCCGggCCGGGCCg -3'
miRNA:   3'- ccGCGaCaCCgGaGGGCaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 33138 0.69 0.485526
Target:  5'- cGCGgUcGggGGCCcCUCGUcCCGGGCCg -3'
miRNA:   3'- cCGCgA-Ca-CCGGaGGGCAaGGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.