miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5549 3' -62.4 NC_001806.1 + 1443 0.67 0.579257
Target:  5'- cGGCGCcgGcGGCagggCCC---CCGGGCCg -3'
miRNA:   3'- -CCGCGa-CaCCGga--GGGcaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 1529 0.68 0.550546
Target:  5'- gGGCGCaaaaGUcccuccgcGGCCcgcgccaCCGggCCGGGCCg -3'
miRNA:   3'- -CCGCGa---CA--------CCGGag-----GGCaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 1646 0.66 0.644241
Target:  5'- cGGCGUgcgaGUgGGCCUCcuccucgcagaaguCCGgcgcgCCGGGCg -3'
miRNA:   3'- -CCGCGa---CA-CCGGAG--------------GGCaa---GGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 1697 0.67 0.569645
Target:  5'- uGGCGUcgGUGGUC-CCCGaggCCGccgcccGGCCg -3'
miRNA:   3'- -CCGCGa-CACCGGaGGGCaa-GGC------CCGG- -5'
5549 3' -62.4 NC_001806.1 + 1763 0.67 0.579257
Target:  5'- cGCGCgGggacaugGGCa--CCGgcgugUCCGGGCCg -3'
miRNA:   3'- cCGCGaCa------CCGgagGGCa----AGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 1867 0.7 0.402878
Target:  5'- aGGCGCgcgugcGcGGCCUCCaCGcgcgcgaagacccCCGGGCCg -3'
miRNA:   3'- -CCGCGa-----CaCCGGAGG-GCaa-----------GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 2675 0.66 0.637435
Target:  5'- gGGCGCcgccgUGUGGCUgggcCCCGg---GGGCUg -3'
miRNA:   3'- -CCGCG-----ACACCGGa---GGGCaaggCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 2921 0.68 0.512989
Target:  5'- gGGuCGCgGgccgccGCCUCCgGgcggCCGGGCCg -3'
miRNA:   3'- -CC-GCGaCac----CGGAGGgCaa--GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 3351 0.66 0.637435
Target:  5'- gGGgGCUGgcgGGCCgggcCCCGgccagccCCGGGaCg -3'
miRNA:   3'- -CCgCGACa--CCGGa---GGGCaa-----GGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 3969 0.66 0.670432
Target:  5'- cGCGCggGUucuggagccaccccaGGCCUCCgCG-UCCGGGgUg -3'
miRNA:   3'- cCGCGa-CA---------------CCGGAGG-GCaAGGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 4288 0.68 0.531647
Target:  5'- cGGgGCUGcccGGCCgugaagcggCCCGUggcgUCGcGGCCg -3'
miRNA:   3'- -CCgCGACa--CCGGa--------GGGCAa---GGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 4715 0.79 0.109327
Target:  5'- cGCGUaGcggGGCCUCCCGUUcgcggccCCGGGCCg -3'
miRNA:   3'- cCGCGaCa--CCGGAGGGCAA-------GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 4940 0.71 0.368091
Target:  5'- cGGCGUcgGUgcccgccgcgggGGcCCUCCCGUcccgCCGGGCg -3'
miRNA:   3'- -CCGCGa-CA------------CC-GGAGGGCAa---GGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 5599 0.66 0.617987
Target:  5'- gGGgGCccGUGGCCgcggCCCGUUggucgaaccCCcGGCCc -3'
miRNA:   3'- -CCgCGa-CACCGGa---GGGCAA---------GGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 7825 0.68 0.522286
Target:  5'- cGCGCgGcUGGUCcacaCCCaGUggcUCCGGGCCa -3'
miRNA:   3'- cCGCGaC-ACCGGa---GGG-CA---AGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 9831 0.68 0.528832
Target:  5'- cGCGCUGUGGgaggggcuguuccaCCaCCgCGUUCCGGuacugcGCCg -3'
miRNA:   3'- cCGCGACACC--------------GGaGG-GCAAGGCC------CGG- -5'
5549 3' -62.4 NC_001806.1 + 11259 0.66 0.656868
Target:  5'- cGGUuaUGUGGUgCUCCCGg-CCaGuGGCCg -3'
miRNA:   3'- -CCGcgACACCG-GAGGGCaaGG-C-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 20105 0.68 0.522286
Target:  5'- cGGCGCcGUcugcgGGCgUCggUCGcgCCGGGCCu -3'
miRNA:   3'- -CCGCGaCA-----CCGgAG--GGCaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 21923 0.69 0.476526
Target:  5'- cGCGCggcgGUGGCCggCCGcgacgccaCGGGCCc -3'
miRNA:   3'- cCGCGa---CACCGGagGGCaag-----GCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 22062 0.7 0.407781
Target:  5'- cGGCGCcG-GGCC-CCCGcccCCGGGgCg -3'
miRNA:   3'- -CCGCGaCaCCGGaGGGCaa-GGCCCgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.