Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5549 | 3' | -62.4 | NC_001806.1 | + | 42379 | 0.66 | 0.656868 |
Target: 5'- aGGuCGUacGUGGCC-CCCGcgCCccccagacgcuGGGCCu -3' miRNA: 3'- -CC-GCGa-CACCGGaGGGCaaGG-----------CCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 5599 | 0.66 | 0.617987 |
Target: 5'- gGGgGCccGUGGCCgcggCCCGUUggucgaaccCCcGGCCc -3' miRNA: 3'- -CCgCGa-CACCGGa---GGGCAA---------GGcCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 51752 | 0.66 | 0.617987 |
Target: 5'- uGGCGCcaaagcUGcUGGCgCgcacCCCGUUCaagagcgGGGCCg -3' miRNA: 3'- -CCGCG------AC-ACCG-Ga---GGGCAAGg------CCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 35823 | 0.66 | 0.656868 |
Target: 5'- gGGCGCgugGcGGCCUCCUa----GGGUCa -3' miRNA: 3'- -CCGCGa--CaCCGGAGGGcaaggCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 119903 | 0.66 | 0.647157 |
Target: 5'- cGGCGC--UGGCCacggCCCugaCCGaGGCCu -3' miRNA: 3'- -CCGCGacACCGGa---GGGcaaGGC-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 27776 | 0.66 | 0.626737 |
Target: 5'- cGgGUUG-GGCC-CCCaaaucggGggCCGGGCCg -3' miRNA: 3'- cCgCGACaCCGGaGGG-------CaaGGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 3351 | 0.66 | 0.637435 |
Target: 5'- gGGgGCUGgcgGGCCgggcCCCGgccagccCCGGGaCg -3' miRNA: 3'- -CCgCGACa--CCGGa---GGGCaa-----GGCCCgG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 32982 | 0.66 | 0.647157 |
Target: 5'- -cCGCcG-GGgC-CCCGggCCGGGCCg -3' miRNA: 3'- ccGCGaCaCCgGaGGGCaaGGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 11259 | 0.66 | 0.656868 |
Target: 5'- cGGUuaUGUGGUgCUCCCGg-CCaGuGGCCg -3' miRNA: 3'- -CCGcgACACCG-GAGGGCaaGG-C-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 150680 | 0.66 | 0.627709 |
Target: 5'- cGCGCUGgcggccgccgaUGGCCagUCCCGcccCCGaGGCg -3' miRNA: 3'- cCGCGAC-----------ACCGG--AGGGCaa-GGC-CCGg -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 57326 | 0.66 | 0.616043 |
Target: 5'- cGCGaggUGUGGCCguccgucgucgaCCCGUcCCuGGCCg -3' miRNA: 3'- cCGCg--ACACCGGa-----------GGGCAaGGcCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 23893 | 0.66 | 0.627709 |
Target: 5'- uGCGCgugGUGGUgcuguaCUCgCCGcugCCGGGCg -3' miRNA: 3'- cCGCGa--CACCG------GAG-GGCaa-GGCCCGg -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 30177 | 0.66 | 0.637435 |
Target: 5'- -cCGCcccgGGCCcCCCGcgUCCGcGGCCg -3' miRNA: 3'- ccGCGaca-CCGGaGGGCa-AGGC-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 57833 | 0.66 | 0.637435 |
Target: 5'- gGGUGCgGUGGgCgacCCCGUcuuagguuUCUuuaGGGCCg -3' miRNA: 3'- -CCGCGaCACCgGa--GGGCA--------AGG---CCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 2675 | 0.66 | 0.637435 |
Target: 5'- gGGCGCcgccgUGUGGCUgggcCCCGg---GGGCUg -3' miRNA: 3'- -CCGCG-----ACACCGGa---GGGCaaggCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 79845 | 0.66 | 0.617987 |
Target: 5'- uGGUGUcugGUGuGCCccUCCCGc-UCGGGCCc -3' miRNA: 3'- -CCGCGa--CAC-CGG--AGGGCaaGGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 91145 | 0.66 | 0.617987 |
Target: 5'- -cCGC-GUGGCCg-CUGUUCgaGGGCCa -3' miRNA: 3'- ccGCGaCACCGGagGGCAAGg-CCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 1646 | 0.66 | 0.644241 |
Target: 5'- cGGCGUgcgaGUgGGCCUCcuccucgcagaaguCCGgcgcgCCGGGCg -3' miRNA: 3'- -CCGCGa---CA-CCGGAG--------------GGCaa---GGCCCGg -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 88782 | 0.66 | 0.617987 |
Target: 5'- cGGCcacccgGUGGCCUUCCGgagUCaGGCCc -3' miRNA: 3'- -CCGcga---CACCGGAGGGCaa-GGcCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 135596 | 0.66 | 0.637435 |
Target: 5'- cGCGCUGcUGGCgCUCCa-----GGGCCc -3' miRNA: 3'- cCGCGAC-ACCG-GAGGgcaaggCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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