miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5549 3' -62.4 NC_001806.1 + 151304 0.69 0.485526
Target:  5'- cGGCGgUGggccgGGCCUCuggcgCCGgcUCGGGCg -3'
miRNA:   3'- -CCGCgACa----CCGGAG-----GGCaaGGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 150872 0.68 0.550546
Target:  5'- cGGCuccGCg--GGCCagggCCCGggCaCGGGCCu -3'
miRNA:   3'- -CCG---CGacaCCGGa---GGGCaaG-GCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 150680 0.66 0.627709
Target:  5'- cGCGCUGgcggccgccgaUGGCCagUCCCGcccCCGaGGCg -3'
miRNA:   3'- cCGCGAC-----------ACCGG--AGGGCaa-GGC-CCGg -5'
5549 3' -62.4 NC_001806.1 + 145968 0.68 0.550546
Target:  5'- uGUGgUGUGGCCgacCCCcUUuuGGGCg -3'
miRNA:   3'- cCGCgACACCGGa--GGGcAAggCCCGg -5'
5549 3' -62.4 NC_001806.1 + 145037 0.7 0.42439
Target:  5'- uGCGCUGUGGUuuuuuuUUCCuCGguguucugCCGGGCUc -3'
miRNA:   3'- cCGCGACACCG------GAGG-GCaa------GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 140937 1.12 0.000542
Target:  5'- cGGCGCUGUGGCCUCCCGUUCCGGGCCc -3'
miRNA:   3'- -CCGCGACACCGGAGGGCAAGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 137972 0.67 0.569645
Target:  5'- uGCGCgaGUacgcccGCCUCUCGUauagCUGGGCCa -3'
miRNA:   3'- cCGCGa-CAc-----CGGAGGGCAa---GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 136372 0.71 0.383646
Target:  5'- cGGCGCgcuccGcGGCCUCCgCGa-CCGuGGCCa -3'
miRNA:   3'- -CCGCGa----CaCCGGAGG-GCaaGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 135596 0.66 0.637435
Target:  5'- cGCGCUGcUGGCgCUCCa-----GGGCCc -3'
miRNA:   3'- cCGCGAC-ACCG-GAGGgcaaggCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 134316 0.66 0.666561
Target:  5'- gGGCggGUUGuUGGCCagCagGUaCCGGGCCa -3'
miRNA:   3'- -CCG--CGAC-ACCGGagGg-CAaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 132978 0.7 0.441396
Target:  5'- cGCGCUggugGUGGCCgcUCCCucagagccCUGGGCCg -3'
miRNA:   3'- cCGCGA----CACCGG--AGGGcaa-----GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 131949 0.67 0.568686
Target:  5'- gGGCGCUGUacgcgugcguccuGGCggCCCuGgagcgccagaCCGGGCCg -3'
miRNA:   3'- -CCGCGACA-------------CCGgaGGG-Caa--------GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 131497 0.72 0.303589
Target:  5'- aGGgGCcaaguUGGCC-CCCGgacCCGGGCCg -3'
miRNA:   3'- -CCgCGac---ACCGGaGGGCaa-GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 131357 0.72 0.310307
Target:  5'- cGGCGCUGUcGGagCUCCCca-CCGaGGCCu -3'
miRNA:   3'- -CCGCGACA-CCg-GAGGGcaaGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 130629 0.69 0.476526
Target:  5'- uGGCGUUGcuggaGGCCugucUCCgCGUUCCcauGGCCa -3'
miRNA:   3'- -CCGCGACa----CCGG----AGG-GCAAGGc--CCGG- -5'
5549 3' -62.4 NC_001806.1 + 129521 0.69 0.485526
Target:  5'- cGCGCaguugGUGGaCUUCCUGUgcggucUCCGGGgCg -3'
miRNA:   3'- cCGCGa----CACC-GGAGGGCA------AGGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 127040 0.73 0.26563
Target:  5'- aGCuaUG-GGCCUCUCGUUCUccgGGGCCc -3'
miRNA:   3'- cCGcgACaCCGGAGGGCAAGG---CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 120107 0.69 0.476526
Target:  5'- gGGCcCUG-GGCCaggCCa--UCCGGGCCg -3'
miRNA:   3'- -CCGcGACaCCGGa--GGgcaAGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 119903 0.66 0.647157
Target:  5'- cGGCGC--UGGCCacggCCCugaCCGaGGCCu -3'
miRNA:   3'- -CCGCGacACCGGa---GGGcaaGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 119586 0.68 0.540124
Target:  5'- cGGUGCUGgcgGGUCUggagcccCCCGgcggGGGCCg -3'
miRNA:   3'- -CCGCGACa--CCGGA-------GGGCaaggCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.