Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5549 | 3' | -62.4 | NC_001806.1 | + | 151304 | 0.69 | 0.485526 |
Target: 5'- cGGCGgUGggccgGGCCUCuggcgCCGgcUCGGGCg -3' miRNA: 3'- -CCGCgACa----CCGGAG-----GGCaaGGCCCGg -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 150872 | 0.68 | 0.550546 |
Target: 5'- cGGCuccGCg--GGCCagggCCCGggCaCGGGCCu -3' miRNA: 3'- -CCG---CGacaCCGGa---GGGCaaG-GCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 150680 | 0.66 | 0.627709 |
Target: 5'- cGCGCUGgcggccgccgaUGGCCagUCCCGcccCCGaGGCg -3' miRNA: 3'- cCGCGAC-----------ACCGG--AGGGCaa-GGC-CCGg -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 145968 | 0.68 | 0.550546 |
Target: 5'- uGUGgUGUGGCCgacCCCcUUuuGGGCg -3' miRNA: 3'- cCGCgACACCGGa--GGGcAAggCCCGg -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 145037 | 0.7 | 0.42439 |
Target: 5'- uGCGCUGUGGUuuuuuuUUCCuCGguguucugCCGGGCUc -3' miRNA: 3'- cCGCGACACCG------GAGG-GCaa------GGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 140937 | 1.12 | 0.000542 |
Target: 5'- cGGCGCUGUGGCCUCCCGUUCCGGGCCc -3' miRNA: 3'- -CCGCGACACCGGAGGGCAAGGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 137972 | 0.67 | 0.569645 |
Target: 5'- uGCGCgaGUacgcccGCCUCUCGUauagCUGGGCCa -3' miRNA: 3'- cCGCGa-CAc-----CGGAGGGCAa---GGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 136372 | 0.71 | 0.383646 |
Target: 5'- cGGCGCgcuccGcGGCCUCCgCGa-CCGuGGCCa -3' miRNA: 3'- -CCGCGa----CaCCGGAGG-GCaaGGC-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 135596 | 0.66 | 0.637435 |
Target: 5'- cGCGCUGcUGGCgCUCCa-----GGGCCc -3' miRNA: 3'- cCGCGAC-ACCG-GAGGgcaaggCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 134316 | 0.66 | 0.666561 |
Target: 5'- gGGCggGUUGuUGGCCagCagGUaCCGGGCCa -3' miRNA: 3'- -CCG--CGAC-ACCGGagGg-CAaGGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 132978 | 0.7 | 0.441396 |
Target: 5'- cGCGCUggugGUGGCCgcUCCCucagagccCUGGGCCg -3' miRNA: 3'- cCGCGA----CACCGG--AGGGcaa-----GGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 131949 | 0.67 | 0.568686 |
Target: 5'- gGGCGCUGUacgcgugcguccuGGCggCCCuGgagcgccagaCCGGGCCg -3' miRNA: 3'- -CCGCGACA-------------CCGgaGGG-Caa--------GGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 131497 | 0.72 | 0.303589 |
Target: 5'- aGGgGCcaaguUGGCC-CCCGgacCCGGGCCg -3' miRNA: 3'- -CCgCGac---ACCGGaGGGCaa-GGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 131357 | 0.72 | 0.310307 |
Target: 5'- cGGCGCUGUcGGagCUCCCca-CCGaGGCCu -3' miRNA: 3'- -CCGCGACA-CCg-GAGGGcaaGGC-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 130629 | 0.69 | 0.476526 |
Target: 5'- uGGCGUUGcuggaGGCCugucUCCgCGUUCCcauGGCCa -3' miRNA: 3'- -CCGCGACa----CCGG----AGG-GCAAGGc--CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 129521 | 0.69 | 0.485526 |
Target: 5'- cGCGCaguugGUGGaCUUCCUGUgcggucUCCGGGgCg -3' miRNA: 3'- cCGCGa----CACC-GGAGGGCA------AGGCCCgG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 127040 | 0.73 | 0.26563 |
Target: 5'- aGCuaUG-GGCCUCUCGUUCUccgGGGCCc -3' miRNA: 3'- cCGcgACaCCGGAGGGCAAGG---CCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 120107 | 0.69 | 0.476526 |
Target: 5'- gGGCcCUG-GGCCaggCCa--UCCGGGCCg -3' miRNA: 3'- -CCGcGACaCCGGa--GGgcaAGGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 119903 | 0.66 | 0.647157 |
Target: 5'- cGGCGC--UGGCCacggCCCugaCCGaGGCCu -3' miRNA: 3'- -CCGCGacACCGGa---GGGcaaGGC-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 119586 | 0.68 | 0.540124 |
Target: 5'- cGGUGCUGgcgGGUCUggagcccCCCGgcggGGGCCg -3' miRNA: 3'- -CCGCGACa--CCGGA-------GGGCaaggCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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