miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5549 3' -62.4 NC_001806.1 + 116534 0.66 0.676229
Target:  5'- uGGCGCgcgaaaucGUGGCgCggCUCGUggccaggggcaUCCGGGaCCu -3'
miRNA:   3'- -CCGCGa-------CACCG-Ga-GGGCA-----------AGGCCC-GG- -5'
5549 3' -62.4 NC_001806.1 + 108543 0.66 0.676229
Target:  5'- cGCGUgcgGcUGGCCgcgCCCGccgcUCCGcGGUCa -3'
miRNA:   3'- cCGCGa--C-ACCGGa--GGGCa---AGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 102485 0.7 0.407781
Target:  5'- cGGUaCUGUGGCCggccgcccucggUCCCGaucaCCGcGGCCa -3'
miRNA:   3'- -CCGcGACACCGG------------AGGGCaa--GGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 98696 0.69 0.485526
Target:  5'- gGGCGCUGgccgugGGUCUgUUGgUCCuGGCCg -3'
miRNA:   3'- -CCGCGACa-----CCGGAgGGCaAGGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 94172 0.74 0.25386
Target:  5'- gGGCGCUGcGGCgUCguCUGaggCCGGGCCu -3'
miRNA:   3'- -CCGCGACaCCGgAG--GGCaa-GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 93997 0.67 0.560073
Target:  5'- cGGCGCcGcgagaUGGCCgcCCCGgugUCCGaGCCc -3'
miRNA:   3'- -CCGCGaC-----ACCGGa-GGGCa--AGGCcCGG- -5'
5549 3' -62.4 NC_001806.1 + 91145 0.66 0.617987
Target:  5'- -cCGC-GUGGCCg-CUGUUCgaGGGCCa -3'
miRNA:   3'- ccGCGaCACCGGagGGCAAGg-CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 90543 0.72 0.331135
Target:  5'- aGGCGCUGUgugagcgccucGGCCUggaCCCGgaCCGcGCCc -3'
miRNA:   3'- -CCGCGACA-----------CCGGA---GGGCaaGGCcCGG- -5'
5549 3' -62.4 NC_001806.1 + 88782 0.66 0.617987
Target:  5'- cGGCcacccgGUGGCCUUCCGgagUCaGGCCc -3'
miRNA:   3'- -CCGcga---CACCGGAGGGCaa-GGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 84901 0.67 0.598577
Target:  5'- uGGUGCgucgGGCCUCCCGgaagagCCu-GCCg -3'
miRNA:   3'- -CCGCGaca-CCGGAGGGCaa----GGccCGG- -5'
5549 3' -62.4 NC_001806.1 + 79845 0.66 0.617987
Target:  5'- uGGUGUcugGUGuGCCccUCCCGc-UCGGGCCc -3'
miRNA:   3'- -CCGCGa--CAC-CGG--AGGGCaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 79549 0.68 0.512063
Target:  5'- cGGCGCccGUgGGCC-CCCGcgacgacUUCCGGcGCUu -3'
miRNA:   3'- -CCGCGa-CA-CCGGaGGGC-------AAGGCC-CGG- -5'
5549 3' -62.4 NC_001806.1 + 78041 0.68 0.526023
Target:  5'- uGGCGCUgGUGGCCagcucCCCGgaacacauuuacaccUUuuGGcGCCu -3'
miRNA:   3'- -CCGCGA-CACCGGa----GGGC---------------AAggCC-CGG- -5'
5549 3' -62.4 NC_001806.1 + 76555 0.68 0.550546
Target:  5'- cGGgGCUGcgggaggugcUGGCCgcgCgCGagcgCCGGGCCc -3'
miRNA:   3'- -CCgCGAC----------ACCGGa--GgGCaa--GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 75984 0.67 0.588903
Target:  5'- aGCGC---GGCCUUCgGggCCGcGGCCg -3'
miRNA:   3'- cCGCGacaCCGGAGGgCaaGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 74873 0.68 0.531647
Target:  5'- uGGCGaccCUGcgGGCCUCCCugccggCGGGCUg -3'
miRNA:   3'- -CCGC---GACa-CCGGAGGGcaag--GCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 73186 0.67 0.598577
Target:  5'- aGGCGCUGaagacucGCCgcucgCCCGagcccCCGGGCg -3'
miRNA:   3'- -CCGCGACac-----CGGa----GGGCaa---GGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 73057 0.68 0.541069
Target:  5'- gGGcCGCgGUccccGCCU-CCGUUCCGGaGCCu -3'
miRNA:   3'- -CC-GCGaCAc---CGGAgGGCAAGGCC-CGG- -5'
5549 3' -62.4 NC_001806.1 + 72534 0.66 0.673332
Target:  5'- cGGCGUg--GGCC-CCCGggaggggguagggggCCcgGGGCCa -3'
miRNA:   3'- -CCGCGacaCCGGaGGGCaa-------------GG--CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 68799 0.69 0.467611
Target:  5'- cGUGCaagagGGCCUCCgGUUCUuGGCCc -3'
miRNA:   3'- cCGCGaca--CCGGAGGgCAAGGcCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.