Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5549 | 3' | -62.4 | NC_001806.1 | + | 127040 | 0.73 | 0.26563 |
Target: 5'- aGCuaUG-GGCCUCUCGUUCUccgGGGCCc -3' miRNA: 3'- cCGcgACaCCGGAGGGCAAGG---CCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 94172 | 0.74 | 0.25386 |
Target: 5'- gGGCGCUGcGGCgUCguCUGaggCCGGGCCu -3' miRNA: 3'- -CCGCGACaCCGgAG--GGCaa-GGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 64770 | 0.75 | 0.206128 |
Target: 5'- aGCGCgccacGGCCUCCgCGUUCuCGGGCg -3' miRNA: 3'- cCGCGaca--CCGGAGG-GCAAG-GCCCGg -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 4715 | 0.79 | 0.109327 |
Target: 5'- cGCGUaGcggGGCCUCCCGUUcgcggccCCGGGCCg -3' miRNA: 3'- cCGCGaCa--CCGGAGGGCAA-------GGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 34399 | 0.8 | 0.101683 |
Target: 5'- gGGCgGCgGUGGCCgggCCGggCCGGGCCg -3' miRNA: 3'- -CCG-CGaCACCGGag-GGCaaGGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 4940 | 0.71 | 0.368091 |
Target: 5'- cGGCGUcgGUgcccgccgcgggGGcCCUCCCGUcccgCCGGGCg -3' miRNA: 3'- -CCGCGa-CA------------CC-GGAGGGCAa---GGCCCGg -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 52733 | 0.71 | 0.383646 |
Target: 5'- cGGCGCgg-GGCC-CCCGcUUCCGGauGCg -3' miRNA: 3'- -CCGCGacaCCGGaGGGC-AAGGCC--CGg -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 130629 | 0.69 | 0.476526 |
Target: 5'- uGGCGUUGcuggaGGCCugucUCCgCGUUCCcauGGCCa -3' miRNA: 3'- -CCGCGACa----CCGG----AGG-GCAAGGc--CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 120107 | 0.69 | 0.476526 |
Target: 5'- gGGCcCUG-GGCCaggCCa--UCCGGGCCg -3' miRNA: 3'- -CCGcGACaCCGGa--GGgcaAGGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 21923 | 0.69 | 0.476526 |
Target: 5'- cGCGCggcgGUGGCCggCCGcgacgccaCGGGCCc -3' miRNA: 3'- cCGCGa---CACCGGagGGCaag-----GCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 68799 | 0.69 | 0.467611 |
Target: 5'- cGUGCaagagGGCCUCCgGUUCUuGGCCc -3' miRNA: 3'- cCGCGaca--CCGGAGGgCAAGGcCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 24687 | 0.69 | 0.467611 |
Target: 5'- uGCGCgccGGCCcggCCCGguggCgCGGGCCg -3' miRNA: 3'- cCGCGacaCCGGa--GGGCaa--G-GCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 132978 | 0.7 | 0.441396 |
Target: 5'- cGCGCUggugGUGGCCgcUCCCucagagccCUGGGCCg -3' miRNA: 3'- cCGCGA----CACCGG--AGGGcaa-----GGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 22559 | 0.7 | 0.432844 |
Target: 5'- cGGCGCUGacgggGGCCgcggggagcCCCGgcgCCGGcGCa -3' miRNA: 3'- -CCGCGACa----CCGGa--------GGGCaa-GGCC-CGg -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 145037 | 0.7 | 0.42439 |
Target: 5'- uGCGCUGUGGUuuuuuuUUCCuCGguguucugCCGGGCUc -3' miRNA: 3'- cCGCGACACCG------GAGG-GCaa------GGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 22062 | 0.7 | 0.407781 |
Target: 5'- cGGCGCcG-GGCC-CCCGcccCCGGGgCg -3' miRNA: 3'- -CCGCGaCaCCGGaGGGCaa-GGCCCgG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 102485 | 0.7 | 0.407781 |
Target: 5'- cGGUaCUGUGGCCggccgcccucggUCCCGaucaCCGcGGCCa -3' miRNA: 3'- -CCGcGACACCGG------------AGGGCaa--GGC-CCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 1867 | 0.7 | 0.402878 |
Target: 5'- aGGCGCgcgugcGcGGCCUCCaCGcgcgcgaagacccCCGGGCCg -3' miRNA: 3'- -CCGCGa-----CaCCGGAGG-GCaa-----------GGCCCGG- -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 22313 | 0.7 | 0.391585 |
Target: 5'- uGGCGCUGgaccaGGCCUgcuUCCGgaUCuCGGGCg -3' miRNA: 3'- -CCGCGACa----CCGGA---GGGCa-AG-GCCCGg -5' |
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5549 | 3' | -62.4 | NC_001806.1 | + | 136372 | 0.71 | 0.383646 |
Target: 5'- cGGCGCgcuccGcGGCCUCCgCGa-CCGuGGCCa -3' miRNA: 3'- -CCGCGa----CaCCGGAGG-GCaaGGC-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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