miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 5' -54.5 NC_001806.1 + 146181 0.68 0.857936
Target:  5'- gGUGGUCaggcagcccGGGCCGCGGcucugugguuaACACCAg--- -3'
miRNA:   3'- -CACCAGa--------CCUGGCGCC-----------UGUGGUaaau -5'
5550 5' -54.5 NC_001806.1 + 140068 1.07 0.005035
Target:  5'- cGUGGUCUGGACCGCGGACACCAUUUAc -3'
miRNA:   3'- -CACCAGACCUGGCGCCUGUGGUAAAU- -5'
5550 5' -54.5 NC_001806.1 + 137328 0.67 0.901094
Target:  5'- -aGGUCuUGGACUGUguggugacGGGCGCCAc--- -3'
miRNA:   3'- caCCAG-ACCUGGCG--------CCUGUGGUaaau -5'
5550 5' -54.5 NC_001806.1 + 136691 0.67 0.901094
Target:  5'- uUGGggCUGcaGACCGCGGGcCGCCAc--- -3'
miRNA:   3'- cACCa-GAC--CUGGCGCCU-GUGGUaaau -5'
5550 5' -54.5 NC_001806.1 + 132650 0.66 0.945141
Target:  5'- cUGGUgCgcgGGGCCGCGGccgcuuACGCCGc--- -3'
miRNA:   3'- cACCA-Ga--CCUGGCGCC------UGUGGUaaau -5'
5550 5' -54.5 NC_001806.1 + 131453 0.68 0.857936
Target:  5'- cGUGGUCguccgcGGACCgGCGG-CGCUGUUg- -3'
miRNA:   3'- -CACCAGa-----CCUGG-CGCCuGUGGUAAau -5'
5550 5' -54.5 NC_001806.1 + 125848 0.67 0.901094
Target:  5'- -cGGgcccCcGGccGCCGCGGACGCCGUg-- -3'
miRNA:   3'- caCCa---GaCC--UGGCGCCUGUGGUAaau -5'
5550 5' -54.5 NC_001806.1 + 125797 0.66 0.945141
Target:  5'- -gGGUauggUGGACCGCGGACuCgGUc-- -3'
miRNA:   3'- caCCAg---ACCUGGCGCCUGuGgUAaau -5'
5550 5' -54.5 NC_001806.1 + 119721 0.66 0.925099
Target:  5'- aGUGG-UUGGAUCGCGGAUgggaagcccugGCCGg--- -3'
miRNA:   3'- -CACCaGACCUGGCGCCUG-----------UGGUaaau -5'
5550 5' -54.5 NC_001806.1 + 119596 0.67 0.913589
Target:  5'- -gGGUCUGGAgccccCCgGCGGGgGCCGcUUUGu -3'
miRNA:   3'- caCCAGACCU-----GG-CGCCUgUGGU-AAAU- -5'
5550 5' -54.5 NC_001806.1 + 109248 0.68 0.849966
Target:  5'- -cGGaaucCUGGGCCcCGGGCACCAg--- -3'
miRNA:   3'- caCCa---GACCUGGcGCCUGUGGUaaau -5'
5550 5' -54.5 NC_001806.1 + 88862 0.68 0.873232
Target:  5'- cGUGGaaCUGGGCCGCGcGcAUGCCGUa-- -3'
miRNA:   3'- -CACCa-GACCUGGCGC-C-UGUGGUAaau -5'
5550 5' -54.5 NC_001806.1 + 75355 0.67 0.913589
Target:  5'- uUGGccCUGGACgCGCGgGugGCCAUc-- -3'
miRNA:   3'- cACCa-GACCUG-GCGC-CugUGGUAaau -5'
5550 5' -54.5 NC_001806.1 + 54774 0.66 0.935615
Target:  5'- aUGGUU--GGCCGCGGcaGCACCAg--- -3'
miRNA:   3'- cACCAGacCUGGCGCC--UGUGGUaaau -5'
5550 5' -54.5 NC_001806.1 + 52205 0.72 0.669291
Target:  5'- -cGGUacguacgGGACCGUGGAUACCGUc-- -3'
miRNA:   3'- caCCAga-----CCUGGCGCCUGUGGUAaau -5'
5550 5' -54.5 NC_001806.1 + 37527 0.66 0.925099
Target:  5'- -aGG-CUcGGGCCGUGGGCgACCAa--- -3'
miRNA:   3'- caCCaGA-CCUGGCGCCUG-UGGUaaau -5'
5550 5' -54.5 NC_001806.1 + 36246 0.66 0.925099
Target:  5'- -aGGUgCUguaGGGCCGCGGAgGCCc---- -3'
miRNA:   3'- caCCA-GA---CCUGGCGCCUgUGGuaaau -5'
5550 5' -54.5 NC_001806.1 + 34392 0.69 0.807189
Target:  5'- gGUGGg-UGGGCgGCGGugGCCGg--- -3'
miRNA:   3'- -CACCagACCUGgCGCCugUGGUaaau -5'
5550 5' -54.5 NC_001806.1 + 30858 0.72 0.648478
Target:  5'- ---uUCUGGGCCGCGGGgGCCGa--- -3'
miRNA:   3'- caccAGACCUGGCGCCUgUGGUaaau -5'
5550 5' -54.5 NC_001806.1 + 28375 0.66 0.940501
Target:  5'- ------gGGACCGgGGGCGCCAUg-- -3'
miRNA:   3'- caccagaCCUGGCgCCUGUGGUAaau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.