Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5551 | 3' | -62.7 | NC_001806.1 | + | 128047 | 0.68 | 0.473063 |
Target: 5'- aUGCCCGugGCgGCcacggccccCAGGUGGggGCc -3' miRNA: 3'- gACGGGCugCGgCGc--------GUCCACCa-CGu -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 41422 | 0.68 | 0.473063 |
Target: 5'- cCUGCCCagcGCGCCGUGgucGG-GGUGCGc -3' miRNA: 3'- -GACGGGc--UGCGGCGCgu-CCaCCACGU- -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 22773 | 0.68 | 0.473063 |
Target: 5'- -cGCCgGGCGCCGCGCccAGGccGGccGCGu -3' miRNA: 3'- gaCGGgCUGCGGCGCG--UCCa-CCa-CGU- -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 76283 | 0.68 | 0.455184 |
Target: 5'- cCUGgCCGcCGCCGCGgAGGagauauccgcGGUGCGc -3' miRNA: 3'- -GACgGGCuGCGGCGCgUCCa---------CCACGU- -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 151142 | 0.67 | 0.547748 |
Target: 5'- -cGCCCGcGCGUCGCaggcGCAGGcgcgccaGGUGCu -3' miRNA: 3'- gaCGGGC-UGCGGCG----CGUCCa------CCACGu -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 20100 | 0.67 | 0.538178 |
Target: 5'- gUGgCCGGCGCCGUcuGCGGGcgucGGUcGCGc -3' miRNA: 3'- gACgGGCUGCGGCG--CGUCCa---CCA-CGU- -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 151265 | 0.67 | 0.519216 |
Target: 5'- -gGCCC-ACGCCGgGC-GGUGGggGCc -3' miRNA: 3'- gaCGGGcUGCGGCgCGuCCACCa-CGu -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 67214 | 0.67 | 0.519216 |
Target: 5'- -gGCCUGGCGgggCGCGCuGGUGG-GCc -3' miRNA: 3'- gaCGGGCUGCg--GCGCGuCCACCaCGu -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 100796 | 0.67 | 0.518275 |
Target: 5'- -cGCCCcucgcgaGACGCCgGCGaCAGGUGGcgaaaggGCGc -3' miRNA: 3'- gaCGGG-------CUGCGG-CGC-GUCCACCa------CGU- -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 30384 | 0.66 | 0.60609 |
Target: 5'- gUGCCgGGCG-CGUGCGacGGUGGcGCGc -3' miRNA: 3'- gACGGgCUGCgGCGCGU--CCACCaCGU- -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 50556 | 0.66 | 0.600204 |
Target: 5'- gCUGCUCGccaacagcgggcucaACGCCGUGCuGGgcgcugcGGUGUAc -3' miRNA: 3'- -GACGGGC---------------UGCGGCGCGuCCa------CCACGU- -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 24274 | 0.66 | 0.596285 |
Target: 5'- gCUGCCCGccgugcaguGCGCCGUGCGcuggccGGcGGcGCGg -3' miRNA: 3'- -GACGGGC---------UGCGGCGCGU------CCaCCaCGU- -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 85747 | 0.66 | 0.595306 |
Target: 5'- -gGUCCGGaGCCGCGCggccacgucguccGGGgGGUGCc -3' miRNA: 3'- gaCGGGCUgCGGCGCG-------------UCCaCCACGu -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 1622 | 0.66 | 0.586505 |
Target: 5'- -cGCCCaGGCcccaGCgCGCGCAGGcgGcGUGCGa -3' miRNA: 3'- gaCGGG-CUG----CG-GCGCGUCCa-C-CACGU- -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 77188 | 0.66 | 0.576755 |
Target: 5'- -cGCCCG--GCUGCGggacgAGGUGGUGCc -3' miRNA: 3'- gaCGGGCugCGGCGCg----UCCACCACGu -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 143288 | 0.66 | 0.576755 |
Target: 5'- gUGUCgGugGUgGUGguGGUGGUGg- -3' miRNA: 3'- gACGGgCugCGgCGCguCCACCACgu -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 143230 | 0.66 | 0.567042 |
Target: 5'- --cCCCaAC-CCGUGCuGGUGGUGCGg -3' miRNA: 3'- gacGGGcUGcGGCGCGuCCACCACGU- -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 102355 | 0.66 | 0.567042 |
Target: 5'- --cCCCGGgGCCGC-CGGGagcaccccgUGGUGCAu -3' miRNA: 3'- gacGGGCUgCGGCGcGUCC---------ACCACGU- -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 74036 | 0.66 | 0.567042 |
Target: 5'- -gGcCCCGAgGCCGUuCAGGUucggcuggaggaGGUGCGg -3' miRNA: 3'- gaC-GGGCUgCGGCGcGUCCA------------CCACGU- -5' |
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5551 | 3' | -62.7 | NC_001806.1 | + | 4752 | 0.66 | 0.625746 |
Target: 5'- -gGCCCGGuCGCCG-GCGGcGUcGGcUGCGu -3' miRNA: 3'- gaCGGGCU-GCGGCgCGUC-CA-CC-ACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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