miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5551 3' -62.7 NC_001806.1 + 133055 0.68 0.481224
Target:  5'- cCUGCCCuGCGCUGCGgCagcuccuGGGUGGgGUAa -3'
miRNA:   3'- -GACGGGcUGCGGCGC-G-------UCCACCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 145026 0.68 0.500524
Target:  5'- -gGCCCGGCGCaUGCGCuguGGUuuuuuuuuccucGGUGUu -3'
miRNA:   3'- gaCGGGCUGCG-GCGCGu--CCA------------CCACGu -5'
5551 3' -62.7 NC_001806.1 + 2425 0.68 0.500524
Target:  5'- -gGCCCGAgG-CGCGCAGG-GG-GCc -3'
miRNA:   3'- gaCGGGCUgCgGCGCGUCCaCCaCGu -5'
5551 3' -62.7 NC_001806.1 + 3718 0.68 0.504239
Target:  5'- -cGCCaacaggggcgcguaGGCGCgGCGCAGGcUGGUcaGCAg -3'
miRNA:   3'- gaCGGg-------------CUGCGgCGCGUCC-ACCA--CGU- -5'
5551 3' -62.7 NC_001806.1 + 100796 0.67 0.518275
Target:  5'- -cGCCCcucgcgaGACGCCgGCGaCAGGUGGcgaaaggGCGc -3'
miRNA:   3'- gaCGGG-------CUGCGG-CGC-GUCCACCa------CGU- -5'
5551 3' -62.7 NC_001806.1 + 151265 0.67 0.519216
Target:  5'- -gGCCC-ACGCCGgGC-GGUGGggGCc -3'
miRNA:   3'- gaCGGGcUGCGGCgCGuCCACCa-CGu -5'
5551 3' -62.7 NC_001806.1 + 67214 0.67 0.519216
Target:  5'- -gGCCUGGCGgggCGCGCuGGUGG-GCc -3'
miRNA:   3'- gaCGGGCUGCg--GCGCGuCCACCaCGu -5'
5551 3' -62.7 NC_001806.1 + 20100 0.67 0.538178
Target:  5'- gUGgCCGGCGCCGUcuGCGGGcgucGGUcGCGc -3'
miRNA:   3'- gACgGGCUGCGGCG--CGUCCa---CCA-CGU- -5'
5551 3' -62.7 NC_001806.1 + 151142 0.67 0.547748
Target:  5'- -cGCCCGcGCGUCGCaggcGCAGGcgcgccaGGUGCu -3'
miRNA:   3'- gaCGGGC-UGCGGCG----CGUCCa------CCACGu -5'
5551 3' -62.7 NC_001806.1 + 143230 0.66 0.567042
Target:  5'- --cCCCaAC-CCGUGCuGGUGGUGCGg -3'
miRNA:   3'- gacGGGcUGcGGCGCGuCCACCACGU- -5'
5551 3' -62.7 NC_001806.1 + 102355 0.66 0.567042
Target:  5'- --cCCCGGgGCCGC-CGGGagcaccccgUGGUGCAu -3'
miRNA:   3'- gacGGGCUgCGGCGcGUCC---------ACCACGU- -5'
5551 3' -62.7 NC_001806.1 + 74036 0.66 0.567042
Target:  5'- -gGcCCCGAgGCCGUuCAGGUucggcuggaggaGGUGCGg -3'
miRNA:   3'- gaC-GGGCUgCGGCGcGUCCA------------CCACGU- -5'
5551 3' -62.7 NC_001806.1 + 24654 0.66 0.567042
Target:  5'- -gGCCCGuguacgugGCGCUgggGCGCgAGGcGGUGCGc -3'
miRNA:   3'- gaCGGGC--------UGCGG---CGCG-UCCaCCACGU- -5'
5551 3' -62.7 NC_001806.1 + 143288 0.66 0.576755
Target:  5'- gUGUCgGugGUgGUGguGGUGGUGg- -3'
miRNA:   3'- gACGGgCugCGgCGCguCCACCACgu -5'
5551 3' -62.7 NC_001806.1 + 77188 0.66 0.576755
Target:  5'- -cGCCCG--GCUGCGggacgAGGUGGUGCc -3'
miRNA:   3'- gaCGGGCugCGGCGCg----UCCACCACGu -5'
5551 3' -62.7 NC_001806.1 + 1622 0.66 0.586505
Target:  5'- -cGCCCaGGCcccaGCgCGCGCAGGcgGcGUGCGa -3'
miRNA:   3'- gaCGGG-CUG----CG-GCGCGUCCa-C-CACGU- -5'
5551 3' -62.7 NC_001806.1 + 85747 0.66 0.595306
Target:  5'- -gGUCCGGaGCCGCGCggccacgucguccGGGgGGUGCc -3'
miRNA:   3'- gaCGGGCUgCGGCGCG-------------UCCaCCACGu -5'
5551 3' -62.7 NC_001806.1 + 24274 0.66 0.596285
Target:  5'- gCUGCCCGccgugcaguGCGCCGUGCGcuggccGGcGGcGCGg -3'
miRNA:   3'- -GACGGGC---------UGCGGCGCGU------CCaCCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 50556 0.66 0.600204
Target:  5'- gCUGCUCGccaacagcgggcucaACGCCGUGCuGGgcgcugcGGUGUAc -3'
miRNA:   3'- -GACGGGC---------------UGCGGCGCGuCCa------CCACGU- -5'
5551 3' -62.7 NC_001806.1 + 51582 0.66 0.60609
Target:  5'- -cGCCacccaGGCGCUGgGCgAGGUGGaGCu -3'
miRNA:   3'- gaCGGg----CUGCGGCgCG-UCCACCaCGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.