miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5551 3' -62.7 NC_001806.1 + 139765 1.08 0.000821
Target:  5'- aCUGCCCGACGCCGCGCAGGUGGUGCAu -3'
miRNA:   3'- -GACGGGCUGCGGCGCGUCCACCACGU- -5'
5551 3' -62.7 NC_001806.1 + 22058 0.76 0.166633
Target:  5'- -gGCCCGGCGCCGgGCccccgcccccGGGgcgGGUGCu -3'
miRNA:   3'- gaCGGGCUGCGGCgCG----------UCCa--CCACGu -5'
5551 3' -62.7 NC_001806.1 + 76369 0.75 0.192658
Target:  5'- cCUGCCCGAgCGaggaCGCGCuGGUGGcgUGCGu -3'
miRNA:   3'- -GACGGGCU-GCg---GCGCGuCCACC--ACGU- -5'
5551 3' -62.7 NC_001806.1 + 144535 0.73 0.243934
Target:  5'- -gGCgCGGCcguGCCGauCGCGGGUGGUGCGa -3'
miRNA:   3'- gaCGgGCUG---CGGC--GCGUCCACCACGU- -5'
5551 3' -62.7 NC_001806.1 + 92905 0.72 0.279851
Target:  5'- -gGCCgCGugGuCCGCGCAGGgcgGG-GCGg -3'
miRNA:   3'- gaCGG-GCugC-GGCGCGUCCa--CCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 55548 0.72 0.279851
Target:  5'- -gGCCCGACuUgGCGgGGGUGGUGUu -3'
miRNA:   3'- gaCGGGCUGcGgCGCgUCCACCACGu -5'
5551 3' -62.7 NC_001806.1 + 35565 0.71 0.311518
Target:  5'- -cGCCCGGCGCCGCGCcgaacgacGUGCGc -3'
miRNA:   3'- gaCGGGCUGCGGCGCGuccac---CACGU- -5'
5551 3' -62.7 NC_001806.1 + 44454 0.71 0.334101
Target:  5'- -gGCCCGGCGuCCGCGUggagcaugcggaGGGaUGGcUGCAc -3'
miRNA:   3'- gaCGGGCUGC-GGCGCG------------UCC-ACC-ACGU- -5'
5551 3' -62.7 NC_001806.1 + 53874 0.71 0.3414
Target:  5'- gCUGUuuGGCaGCCGCGCGGGgaucagGGUcGCc -3'
miRNA:   3'- -GACGggCUG-CGGCGCGUCCa-----CCA-CGu -5'
5551 3' -62.7 NC_001806.1 + 1749 0.7 0.3796
Target:  5'- -gGCCCGGCGguacUCGCGCGGGgacaUGG-GCAc -3'
miRNA:   3'- gaCGGGCUGC----GGCGCGUCC----ACCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 6056 0.69 0.403856
Target:  5'- gUGCCCGACuCCGCGCcGGccccgGGgGCGg -3'
miRNA:   3'- gACGGGCUGcGGCGCGuCCa----CCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 145720 0.69 0.412155
Target:  5'- -gGCCC-ACcugGCCGCGCGGGUGcgcGUGCc -3'
miRNA:   3'- gaCGGGcUG---CGGCGCGUCCAC---CACGu -5'
5551 3' -62.7 NC_001806.1 + 3037 0.69 0.42056
Target:  5'- gCUGgCCGcCGCCGCcaGCAGGgGGcGCAg -3'
miRNA:   3'- -GACgGGCuGCGGCG--CGUCCaCCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 106543 0.69 0.437676
Target:  5'- -gGUgCGAUGCCGCGCuGGUGcGcGCGc -3'
miRNA:   3'- gaCGgGCUGCGGCGCGuCCAC-CaCGU- -5'
5551 3' -62.7 NC_001806.1 + 139112 0.69 0.437676
Target:  5'- gCUGaCCGGCucGCCGCGCGGG-GG-GCu -3'
miRNA:   3'- -GACgGGCUG--CGGCGCGUCCaCCaCGu -5'
5551 3' -62.7 NC_001806.1 + 100387 0.69 0.446382
Target:  5'- -cGCCgGGCGgCGCGgGGGccggGGUGCc -3'
miRNA:   3'- gaCGGgCUGCgGCGCgUCCa---CCACGu -5'
5551 3' -62.7 NC_001806.1 + 76283 0.68 0.455184
Target:  5'- cCUGgCCGcCGCCGCGgAGGagauauccgcGGUGCGc -3'
miRNA:   3'- -GACgGGCuGCGGCGCgUCCa---------CCACGU- -5'
5551 3' -62.7 NC_001806.1 + 22773 0.68 0.473063
Target:  5'- -cGCCgGGCGCCGCGCccAGGccGGccGCGu -3'
miRNA:   3'- gaCGGgCUGCGGCGCG--UCCa-CCa-CGU- -5'
5551 3' -62.7 NC_001806.1 + 41422 0.68 0.473063
Target:  5'- cCUGCCCagcGCGCCGUGgucGG-GGUGCGc -3'
miRNA:   3'- -GACGGGc--UGCGGCGCgu-CCaCCACGU- -5'
5551 3' -62.7 NC_001806.1 + 128047 0.68 0.473063
Target:  5'- aUGCCCGugGCgGCcacggccccCAGGUGGggGCc -3'
miRNA:   3'- gACGGGCugCGgCGc--------GUCCACCa-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.